Publication List

We ask our users to acknowledge use of the UEA HPC facilities by including the following in any publication resulting from work carried out on the HPC. The first part of the statement can be modified as appropriate; but we appreciate consistent use of the bold part of the statement.

"The research presented in this paper was carried out on the High Performance Computing Cluster supported by the Research and Specialist Computing Support service at the University of East Anglia"

Journal Papers

2023

Combining bird tracking data with high-resolution thermal mapping to identify microclimate refugia, Rita F. Ramos, Aldina M. A. Franco, James J. Gilroy & João P. Silva , Scientific Reports, 13, 4726, 2023
Large Modeling Uncertainty in Projecting Decadal Surface Ozone Changes Over City Clusters of China, Xiang Weng, Jiawei Li, Grant L. Forster, Peer Nowack, Geophysical Research Letters, 2023
Developmental diet alters the fecundity-longevity relationship and age-related gene expression in Drosophila melanogaster , David H Collins, PhD, David C Prince, PhD, Jenny L Donelan, MSc, Tracey Chapman, PhD, Andrew F G Bourke, PhD, The Journals of Gerontology: Series A, 2023
Fingerprint of Climate Change on Southern Ocean Carbon Storage, Wright, R. M., Le Quéré, C., Mayot, N., Olsen, A. & Bakker, D. C. E., Apr 2023, In: Global Biogeochemical Cycles. 37, 4, e2022GB007596, 2023
Climate-driven variability of the Southern Ocean CO₂ sink, Mayot, N., Le Quéré, C., Rödenbeck, C., Bernardello, R., Bopp, L., Djeutchouang, L. M., Gehlen, M., Gregor, L., Gruber, N., Hauck, J., Iida, Y., Ilyina, T., Keeling, R. F., Landschützer, P., Manning, A. C., Patara, L., Resplandy, L., Schwinger, J., Séférian, R., Watson, A. J. & 2 others, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 381, 2249, 20220055, 2023
Pelagic connectivity of European sea bass between spawning and nursery grounds, Graham JA, Watson JW, García García LM, Bradley K, Bradley R, Brown M, Ciotti BJ, Goodwin D, Nash RDM, Roche WK, Wogerbauer C and Hyder K, Front. Mar. Sci. 9:1046585, 2023
The impact of stochastic mesoscale weather systems on the Atlantic Ocean, Zhou, S., I.A. Renfrew and X. Zhai, J. Climate, 36, 791-804, 2023
Improved taxonomic annotation of Archaea communities using LotuS2, the Genome Taxonomy Database and RNAseq data, Grant, A., Aleidan, A., Davies, C. S., Udochi, S. C., Fritscher, J., Bahram, M., & Hildebrand, F. , bioRxiv, 2023
Stunting in infancy is associated with atypical activation of working memory and attention networks, Sobanawartiny Wijeakumar, Samuel H. Forbes, Vincent A. Magnotta, Sean Deoni, Kiara Jackson, Vinay P. Singh, Madhuri Tiwari, Aarti Kumar, John P. Spencer, Nature Human Behaviour, 2023 in press
The Impact of Stochastic Mesoscale Weather Systems on the Atlantic Ocean, Shenjie Zhou , Ian A. Renfrew, and Xiaoming Zhai, Journal of Climate, 2023
Measurement of Residual Stresses in Surrogate Coated Nuclear Fuel Particles Using Ring-Core Focussed Ion Beam Digital Image Correlation, Leide AJ, Haynes TA, Tzelepi N, Payne J, Jordan M, Knol S, et al, Nuclear Materials and Energy , 36, 2023
Peridynamic modelling of cracking in TRISO particles for high temperature reactors, TA Haynes et al, Journal of Nuclear Material, 576, 2023
Costs of reproduction are present but latent in eusocial bumblebee queens, DH Collins, DC Prince, JL Donelan et al, BMC Biol 21, 153, 2023

2022

North Atlantic Oscillation response to the Madden-Julian Oscillation in a coupled climate model, Skinner DT, Matthews AJ, Stevens DP, 2022: Weath., 77, 201-205, 2022
Global Carbon Budget 2022, Friedlingstein, P., O'Sullivan, M., Jones, M. W., Andrew, R. M., Gregor, L., Hauck, J., Le Quéré, C., Luijkx, I. T., Olsen, A., Peters, G. P., Peters, W., Pongratz, J., Schwingshackl, C., Sitch, S., Canadell, J. G., Ciais, P., Jackson, R. B., Alin, S. R., Alkama, R., Arneth, A. & 86 others, In: Earth System Science Data. 14, 11, p. 4811-4900 90 p, 2022
A Model to Detect Significant Prostate Cancer Integrating Urinary Peptide and Extracellular Vesicle RNA Data, O’Connell SP, Frantzi M, Latosinska A, Webb M, Mullen W, Pejchinovski M, et al, Cancers 2022 Apr 14;14(8):1995, 2022
Microbiomes of Urine and the Prostate Are Linked to Human Prostate Cancer Risk Groups, Hurst R, Meader E, Gihawi A, Rallapalli G, Clark J, Kay GL, et al., European Urology Oncology, 2022
The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates, Buhigas C, Warren AY, Leung WK, Whitaker HC, Luxton HJ, Hawkins S, et al. Molecular Cancer , 2022 Sep 22 [cited 2022 Sep 22];21(1):183
Topological superfluid defects with discrete point group symmetries, Xiao, Y., Borgh, M.O., Blinova, A. et al., Nat Commun 13, 4635, 2022
Motion stereo at sea: Dense 3D reconstruction from image sequences monitoring conveyor systems on board fishing vessels, Mark Fisher, Geoffrey French, Artjoms Gorpincenko, Helen Holah, Lauren Clayton, Rebecca Skirrow, Michal Mackiewicz, Institution of Engineering and Technology, 2022
Global Carbon Budget 2021, Corinne Le Quéré et al, Earth System Science Data, 14, 2022
A machine learning approach to quantify meteorological drivers of ozone pollution in China from 2015 to 2019, Xiang Weng, Grant L. Forster, and Peer Nowack, Atmospheric Chemistry and Physics, 2022
Word-Object Learning via Visual Exploration in Space (WOLVES): A neural process model of cross-situational word learning, Bhat, Ajaz A. Spencer, John P. Samuelson, Larissa K., APA PsycNet, 2022
Identification of active gaseous-alkane degraders at natural gas seeps, Farhan Ul Haque M, Hernández M, Crombie AT, Murrell JC. ISME J, 2022
Excited-state barrier controls E → Z photoisomerization in p-hydroxycinnamate biochromophores, Ashworth, E. K., Coughlan, N. J. A., Hopkins, W. S., Bieske, E. J. & Bull, J. N., The Journal of Physical Chemistry Letters, 2022
Complexation of green and red Kaede fluorescent protein chromophores by a zwitterion to probe electrostatic and induction field effects, Ashworth, E. K., Stockett, M. H., Kjaer, C., Bulman Page, P. C., Meech, S. R., Nielsen, S. B. & Bull, J. N., The Journal of Physical Chemistry A, 2022
Genetic load: genomic estimates and applications in non-model animals, Bertorelle, G., Raffini, F., Bosse, M., Bortoluzzi, C., Iannucci, A., Trucchi, E., Morales, H.E. and Van Oosterhout, C, Nature Reviews Genetics, 2022
Genomic erosion in a demographically recovered bird species during conservation rescue, Jackson, H.A., Percival‐Alwyn, L., Ryan, C., Albeshr, M.F., Venturi, L., Morales, H.E., Mathers, T.C., Cocker, J., Speak, S.A., van Oosterhout C,. Conservation Biology, 36(4), p.e13918., 2022
Demographic variation in space and time: implications for conservation targeting, Catriona A. Morrison, Simon J. Butler, Jacquie A. Clark, Juan Arizaga, Oriol Baltà, Jaroslav Cepák, Arantza Leal Nebot, Markus Piha, Kasper Thorup, Thomas Wenninger, Robert A. Robinson and Jennifer A. Gill, Royal Society Open Science, 2022
Genomic associations with poxvirus across divergent island populations in Berthelot's pipit, Eleanor C. Sheppard,Claudia A. Martin,Claire Armstrong,Catalina González-Quevedo,Juan Carlos Illera,Alexander Suh,Lewis G. Spurgin,David S. Richardson, Molecular Ecology, 2022
Structure of a cereal purple acid phytase provides new insights to phytate degradation in plants, Faba-Rodriguez R, Gu YH, Salmon M, Dionisio G, Brinch-Pedersen HA, Brearley CA, Hemmings AM, Plant Communications, 2022
Quantification of impacts between 1.5°C and 4°C of global warming on flooding risks in six countries, He Y, Manful D, Warren, R, Forstenhäusler N, Osborn TJ, Price J, Jenkins R, Wallace C and Yamaki D, Climatic Change 170, 2022
Monitoring global drought using the self-calibrating Palmer Drought Severity Index, Barichivich J, Osborn TJ, Harris I, van der Schrier G and Jones PD, Bulletin of the American Meteorological Society 103, S66-S67, 2022

2021

Subsurface oceanic structure associated with atmospheric convectively coupled equatorial Kelvin waves in the eastern Indian Ocean, Azaneu MdVC, Matthews AJ, Baranowski DB, J. Geophys. Res. Oc., 126, 2021
The response of the Nordic Seas to wintertime sea-ice retreat, Wu, Y., D. P. Stevens, I. A. Renfrew, X. Zhai, J. Climate, 34, 6041-6056, 2021
FORTE 2.0: a fast, parallel and flexible coupled climate model, Adam T. Blaker, Manoj Joshi, Bablu Sinha, David P. Stevens, Robin S. Smith, and Joël J.-M. Hirschi, Geoscientific Model Development, 2021
Integration of Urinary EN2 Protein & Cell-Free RNA Data in the Development of a Multivariable Risk Model for the Detection of Prostate Cancer Prior to Biopsy, Connell S, Mills R, Pandha H, Morgan R, Cooper C, Clark J, et al. Cancers, 2021 Apr 27;3(9):2102
Controlled creation and decay of singly-quantized vortices in a polar magnetic phase, Xiao, Y., Borgh, M.O., Weiss, L.S. et al Commun Phys 4, 52, 2021
Role of jellyfish in the plankton ecosystem revealed using a global ocean biogeochemical model, Rebecca M. Wright, Corinne Le Quéré, Erik Buitenhuis, Sophie Pitois, and Mark J. Gibbons, European Geosciences Union, Bioegeosciences, 2021
Observational evidence that cloud feedback amplifies global warming, Paulo Ceppi and Peer Nowack , PNAS, 2021
Relaxation dynamics of half-quantum vortices in a two-dimensional two-component Bose-Einstein condensate(a), M. T. Wheeler, H. Salman and M. O. Borgh, Europhysics Letters, 2021
Non-statistical fragmentation in photo-activated flavin mononucleotide anions, Giacomozzi, L., Kjær, C., Brøndsted Nielsen, S., Ashworth, E. K., Bull, J. N. & Stockett, M. H., The Journal of Chemical Physics, 2021
Nonadiabatic dynamics between valence, nonvalence, and continuum electronic states in a heteropolycyclic aromatic hydrocarbon, Bull, J. N., Anstöter, C. S., Stockett, M. H., Clarke, C. J., Gibbard, J. A., Bieske, E. J. & Verlet, J. R. R., The Journal of Physical Chemistry Letters, 2021
Action spectroscopy of the isolated red Kaede fluorescent protein chromophore, Coughlan, N. J. A., Stockett, M. H., Kjaer, C., Ashworth, E. K., Bulman Page, P. C., Meech, S. R., Nielsen, S. B., Blancafort, L., Hopkins, W. S. & Bull, J. N., The Journal of Chemical Physics, 2021
Action spectroscopy of isomer-selected luciferin anions, Kjær, C., Bull, J. N., Carrascosa, E., Nielsen, S. B. & Bieske, E. J., European Physical Journal D, 2021
Action spectroscopy of deprotomer-selected hydroxycinnamate anions, Bull, J. N., Buntine, J. T., Carrascosa, E., Stockett, M. H. & Bieske, E. J., European Physical Journal D, 2021
Comment on “Individual heterozygosity predicts translocation success in threatened desert tortoises”, Hansson, B., Morales, H.E. and Van Oosterhout, C, Science, 2021
Bird population declines and species turnover are changing the acoustic properties of spring soundscapes, C. A. Morrison, A. Auniņš, Z. Benkő, L. Brotons, T. Chodkiewicz, P. Chylarecki, V. Escandell, D. P. Eskildsen, A. Gamero, S. Herrando, F. Jiguet, J. A. Kålås, J. Kamp, A. Klvaňová, P. Kmecl, A. Lehikoinen, Å. Lindström, C. Moshøj, D. G. Noble, I. J. Øien, J-Y. Paquet, J. Reif, T. Sattler, B. S. Seaman, S. J. Butler, Nature Communications, 2021
Vaccination against COVID-19 and society's return to normality in England: a modelling study of impacts of different types of naturally acquired and vaccine-induced immunity, Fujian Song, Max O Bachmann, BMJ Open, 2021
Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy, Samuel H. Forbes,a Sobanawartiny Wijeakumar,b Adam T. Eggebrecht,c Vincent A. Magnotta,d and John P. Spencera, Neurophotonics, 2021
Selecting Markov chain orders for generating daily precipitation series across different Köppen climate regimes, Sarah Wilson Kemsley,Timothy J. Osborn,Stephen R. Dorling,Craig Wallace,Joanne Parker, International Journal of Climatology, 2021
Monitoring global drought using the self-calibrating Palmer Drought Severity Index, Barichivich J, Osborn TJ, Harris I, van der Schrier G and Jones PD, Bulletin of the American Meteorological Society 102, S68-S70, 2021
HIVE-COTE 2.0: a new meta ensemble for time series classification, Matthew Middlehurst, James Large, Michael Flynn, Jason Lines, Aaron Bostrom & Anthony Bagnall, Machine Learning volume 110, pages 3211–3243, 2021
The great multivariate time series classification bake off: a review and experimental evaluation of recent algorithmic advances Alejandro Pasos Ruiz, Michael Flynn, James Large, Matthew Middlehurst & Anthony Bagnall, Data Mining and Knowledge Discovery volume 35, pages401–449, 2021
Information processing on equity prices and exchange rate for cross-listed stocks, Scherrer CM, Journal of Financial Markets, Vol 54, 2021
Genomic variation, population history and within-archipelago adaptation between island bird populations. Martin CA, Armstrong C, Illera JC, Emerson BC, Richardson DS & Spurgin LG, R. Soc. Open Sci.8: 201146.Genomic variation, population history and within-archipelago adaptation between island bird populations. Martin CA, Armstrong C, Illera JC, Emerson BC, Richardson DS & Spurgin LG. R. Soc. Open Sci.8: 201146, 2021
Covariation in population trends and demography reveals targets for conservation action, Catriona A. Morrison , Simon J. Butler , Robert A. Robinson et al, Proceedings of the Royal Society Biological Sciences, 2021

2020

A novel stratification framework for predicting outcome in patients with prostate cancer, Luca B alexandru, Moulton V, Ellis C, Edwards DR, Campbell C, Cooper RA, et al, British journal of cancer 2020 May 20;122(10):1467–76
Convergence of Prognostic Gene Signatures Suggests Underlying Mechanisms of Human Prostate Cancer Progression, Luca BA, Moulton V, Ellis C, Connell SP, Brewer DS, Cooper CS., Genes 2020 Jul 16 [cited 2020 Jul 16];11(7):802
Superatom Picture of Collective Nonclassical Light Emission and Dipole Blockade in Atom Arrays, L. A. Williamson, M. O. Borgh, and J. Ruostekoski, Phys. Rev. Lett. 125, 073602, 2020
Global Carbon Budget 2020, Corinne Le Quéré et al, Earth System Science Data, 12, 2020
Temporary reduction in daily global CO₂ emissions during the COVID-19 forced confinement, Corinne Le Quéré et al, Nature Climate Change, 2020
Breaking of Josephson junction oscillations and onset of quantum turbulence in Bose–Einstein condensates, Adam Griffin, Sergey Nazarenko and Davide Proment, Journal of Physics A: Mathematical and Theoretical, Volume 53, Number 17, 2020
Irreversible Dynamics of Vortex Reconnections in Quantum Fluids, Alberto Villois, Davide Proment, and Giorgio Krstulovic, Physical Review Letters, 125, 164501, 2020
Matching theory to characterize sound emission during vortex reconnection in quantum fluids, Davide Proment and Giorgio Krstulovic, Physical Review Fluids 5, 104701, 2020
Spectroscopic characterisation of radical polyinterhalogen molecules, Gregory, J., Verlet, J. R. R. & Bull, J. N., Physical Chemistry Chemical Physics, 2020
Photophysics of isolated Rose Bengal anions, Stockett, M. H., Kjaer, C., Daly, S., Bieske, E. J., Verlet, J. R. R., Nielsen, S. B. & Bull, J., The Journal of Physical Chemistry A, 2020
The Influence of Atlantic Variability on Asian Summer Climate Is Sensitive to the Pattern of the Sea Surface Temperature Anomaly, Satyaban B. Ratna, Timothy J. Osborn, Manoj Joshi, and Jürg Luterbacher, American Meteorological Society, 2020
The Extreme Positive Indian Ocean Dipole of 2019 and Associated Indian Summer Monsoon Rainfall Response, Satyaban B. Ratna,Annalisa Cherchi,Timothy J. Osborn,Manoj Joshi,Umakanth Uppara, Geophysical Research Letters, 2020
Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria, Hernández, M.; Vera-Gargallo, B.; Calabi-Floody, M.; King, G.M.; Conrad, R.; Tebbe, C.C.,2020, 1880.
Development of a multivariable risk model integrating urinary cell DNA methylation and cell-free RNA data for the detection of significant prostate cancer, Shea P. Connell BSc, Eve O'Reilly BSc, Alexandra Tuzova MSc, Martyn Webb MBioSci, Rachel Hurst PhD, Robert Mills FRCS Urol, Fang Zhao MSc, Bharati Bapat PhD, Colin S. Cooper PhD, Antoinette S. Perry PhD, Jeremy Clark PhD, Daniel S. Brewer PhD, The Prostate, 2020
Fingerprinting the Excited-State Dynamics in Methyl Ester and Methyl Ether Anions of Deprotonated para-Coumaric Acid, James N. Bull, Cate S. Anstöter, and Jan R. R. Verlet, J. Phys. Chem. A 2020, 124, 11, 2140–2151
FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals, Thomas Bradley, Simon Moxon,Bioinformatics, btaa007, 2020
Modelling pollution dispersal around Solomon Islands and Vanuatu, Graham, J. A., Haverson, D., Bacon, J., Marine Pollution Bulletin vol. 150, 2020

2019

Controlled creation of a singular spinor vortex by circumventing the Dirac belt trick, Weiss, L.S., Borgh, M.O., Blinova, A. et al, Nat Commun 10, 4772, 2019
Comparing conceptual frameworks for a fish community MSY (FCMSY) using management strategy evaluation: an example from the North Sea, ICES, Thorpe, R.B. and J.A.A. De Oliviera, Journal of Marine Science, 2019
What is multispecies MSY? A worked example from the North Sea, Robert B. Thorpe, Fish Biology, 2019
Genetic correlates of social stratification in Great Britain,Abdellaoui, A., Hugh-Jones, D., Yengo, L. et al., Nat Hum Behav 3, 1332–1342, 2019
Decadal trends in the ocean carbon sink, DeVries, T., C. Le Quéré, O. Andrews, J. Hauck, T. Ilyina, A. Lenton, P. Landshutzer, M. Nowicki, J. Schwinger, and R. Séférian, PNAS, 116, 11646-11651, 2019
Global Carbon Budget 2019, Friedlingstein, Pierre, Matthew W. Jones, Michael O’Sullivan, Robbie M. Andrew, Judith Hauck, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Dorothee C. E. Bakker, Josep G. Canadell, Philippe Ciais, Rob Jackson, Peter Anthoni, Leticia Barbero, Ana Bastos, Vladislav Bastrikov, Meike Becker, Laurent Bopp, Erik Buitenhuis, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Kim I. Currie, Richard A. Feely, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Daniel S. Goll, Nicolas Gruber, Sören Gutekunst, Ian Harris, Vanessa Haverd, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Jed O. Kaplan, Etsushi Kato, Kees Klein Goldewijk, Jan Ivar Korsbakken, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Gregg Marland, Patrick C. McGuire, Joe R. Melton, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Craig Neill, Abdirahman M. Omar, Tsuneo Ono, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Roland Séférian, Jörg Schwinger, Naomi Smith, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N Tubiello, Guido R. van der Werf, Andrew J. Wiltshire, Sönke Zaehle,Earth Syst. Sci. Data, 11, 1783–1838, 2019
SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines, Gihawi A, Rallapalli G, Hurst R, Cooper CS, Leggett RM, Brewer DS. Genome Biol. 2019 Dec 22;20(1):208
Age, sex and other correlates with active travel walking and cycling in England: Analysis of responses to the Active Lives Survey 2016/17,Brainard J, Cooke R, Lane K, Salter C, Preventive Medicine. 2019 Jun 1
A probabilistic classifier ensemble weighting scheme based on cross-validated accuracy estimates, Large, James; Lines, Jason; Bagnall, Anthony, Data Mining and Knowledge Discovery, 17.06.2019
The railroad switch effect of seasonally reversing currents on the Bay of Bengal high salinity core, Sanchez-Franks, A., Webber, B., King, B., Vinayachandran, PN., Matthews, A., Sheehan, P., Behara, A. & Neema, CP., 16 Jun 2019, In : Geophysical Research Letters. 46, 11, p. 6005-6014
The impact of overturning and horizontal circulation in Pine Island Trough on ice shelf melt in the eastern Amundsen Sea, Webber, B., Heywood, K., Stevens, D. & Assmann, K., Jan 2019, In : Journal of Physical Oceanography.49, 1, p. 63-83
Large Contribution of Pteropods to Shallow CaCO3 Export, Buitenhuis, Erik T., Corinne Le Quéré, Nina Bednaršek, Ralf Schiebel,Global Biogeochemical Cycles, 33, 2019
Evaluating Oceanic Uptake of Atmospheric CCl4: A Combined Analysis of Model Simulations and Observations, Suntharalingam, P., Buitenhuis, E., Carpenter, L. J., Butler, J. H., Messias, M. J., Andrews, S. J. & Hackenberg, S. C., Geophysical Research Letters, 46, 2019
A cautionary tale of topography and tilt from Lilauea Caldera, Jessica Johnson, Michael P Poland, Kyle Anderson, Juliet Biggs, Geophysical Research Letters, Vol. 46, No. 8, 28.04.2019, p. 4221-4229, 2019
A capacitor‐discharge mechanism to explain the timing of orogeny‐related global glaciations, Joshi, M., Mills, B. J. W. & Johnson, M., Geophysical Research Letters. 46, 14, p. 8347-8354, 2019
Coupling couples with copulas: analysis of assortative matching on risk attitude, Aristidis K. Nikoloulopoulos, Peter G. Moffatt, Economic Inquiry, 57, 1, p. 654-666, Jan 2019

2018

Cost-Effectiveness and Value of Information Analysis of Brief Interventions to Promote Physical Activity in Primary Care, Gc VS, Suhrcke M, Hardeman W, Sutton S, Wilson ECF. Value in Health, Jan 2018
Implications for workability and survivability in populations exposed to extreme heat under climate change: a modelling study, Andrews, O., C. Le Quéré, T. Kjellstrom, B. Lemke, and A. Haines, The Lancet Planetary Health, 2, e540-e547, 2018
Global Carbon Budget 2018, Le Quéré, Corinne, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Judith Hauck, Julia Pongratz, Penelope A. Pickers, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Almut Arneth, Vivek K. Arora, Leticia Barbero, Ana Bastos, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Scott C. Doney, Thanos Gkritzalis, Daniel S. Goll, Ian Harris, Vanessa Haverd, Forrest M. Hoffman, Mario Hoppema, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Truls Johannesen, Chris D. Jones, Etsushi Kato, Ralph F. Keeling, Kees Klein Goldewijk, Peter Landschützer, Nathalie Lefèvre, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Craig Neill, Are Olsen, Tsueno Ono, Prabir Patra, Anna Peregon, Wouter Peters, Philippe Peylin, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Matthias Rocher, Christian Rödenbeck, Ute Schuster, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Tobias Steinhoff, Adrienne Sutton, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Nicolas Viovy, Anthony P. Walker, Andrew J. Wiltshire, Rebecca Wright, Sönke Zaehle, Bo Zheng: Global Carbon Budget 2018, Earth Syst. Sci. Data, 10, 2141–2194, 2018
Droplet impact onto an elastic plate: A new mechanism for splashing, Pegg, M., Purvis, R., & Korobkin, A. , Journal of Fluid Mechanics, 839, 561-593, 2018
DESNT: A Poor Prognosis Category of Human Prostate Cancer, Luca B, Brewer DS, Edwards DR, Edwards S, Whitaker HC, Merson S, et al. Eur Urol Focus. 2018 Dec 6;4(6):842–50
Typhoid fever outbreak in the Democratic Republic of Congo: Case control and ecological study, Brainard J, D’hondt R, Ali E, Van den Bergh R, De Weggheleire A, Baudot Y, Patigny F, Lambert V, Zachariah R, Maes P, Kenge DK, PLOS neglected tropical diseases. 2018 Oct 3
Internal tides in a dendritic submarine canyon, Aslam, T., R. A. Hall, and S. R. Dye, Progress in Oceanography, 169, 20–32, 2018
The Dynamics of the Southwest Monsoon Current in 2016 from High-Resolution In Situ Observations and Models, Webber, B., Matthews, A. J., Vinayachandran, PN., Neema, CP., Sanchez-Franks, A., Vijith, V., Amol, P. & Baranowski, D. B., Oct 2018, In : Journal of Physical Oceanography. 48, p. 2259-2282
Intraseasonal Variability of Air-Sea Fluxes over the Bay of Bengal during the Southwest Monsoon, Sanchez-Franks, A., Kent, E. C., Matthews, A. J., Webber, B. G. M., Peatman, S. C. & Vinayachandran, P. N., Sep 2018, In : Journal of Climate. 31, p. 7087–7109
BoBBLE (Bay of Bengal Boundary Layer Experiment): Ocean-atmosphere interaction and its impact on the South Asian monsoon, Vinayachandran, PN., Matthews, A. J., Vijay Kumar, K., Sanchez-Franks, A., Thushara, V., George, J., Vijith, V., Webber, B. G. M., Queste, B. Y., Roy, R., Sarkar, A., Baranowski, D. B., Bhat, GS., Klingaman, N. P., Peatman, S. C., Parida, C., Heywood, K. J., Hall, R., King, B., Kent, E. C. & 13 others, Aug 2018, In : Bulletin of the American Meteorological Society. 99, 8, p. 1569–1587
A D-vine copula mixed model for joint meta-analysis and comparison of diagnostic tests, Aristidis K. Nikoloulopoulos,Statistical Methods in Medical Research, 26 Sep 2018
Hybrid copula mixed models for combining case-control and cohort studies in meta-analysis of diagnostic tests, Aristidis K. Nikoloulopoulos,Statistical Methods in Medical Research, 27, 8, p. 2540-2553, 14 p., 1 Aug 2018
On composite likelihood in bivariate meta-analysis of diagnostic test accuracy studies, Aristidis K. Nikoloulopoulos, AStA Advances in Statistical Analysis, 102,2p. 211-227, Apr 2018
Global Nitrous Oxide Production Determined by Oxygen Sensitivity of Nitrification and Denitrification, Ji, Qixing, Erik Buitenhuis, Parvadha Suntharalingam, Jorge L. Sarmiento, Bess B. Ward, Global Biogeochemical Cycles, 32, 2018
Constraints on global oceanic emissions of N2O from observations and models, Buitenhuis, E. T., Suntharalingam, P., Le Quéré, C., Biogeosciences, 15 (7), pp 2161-2175, 2018
The impact of high-frequencyweather systems on SST and surfacemixed layer in the central Arabian Sea, Zhou, S., Zhai, X., & Renfrew, I. A., Journal of Geophysical Research:Oceans, 123(2), 1091–1104, 2018
Mean, variability and trend of Southern Ocean wind stress: Role of wind fluctuations,Lin, X., X. Zhai, Z. Wang, and D. R. Munday,Journal of Climate, 31, 3557-3573, 2018
On Time Series Classification with Dictionary-Based Classifiers, Large, James; Bagnall, Anthony; Malinowski, Simon; Tavenard, Romain, Intelligent Data Analysis, 05.12.2018
Time Series Classification with HIVE-COTE: The Hierarchical Vote Collective of Transformation-based Ensembles, Lines, Jason; Taylor, Sarah; Bagnall, Anthony, ACM Transactions on Knowledge Discovery from Data, Vol. 12, No. 5, 52, Jul 2018
Global Carbon Budget 2017, Le Quéré, Corinne, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Julia Pongratz, Andrew C. Manning, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Robert B. Jackson, Thomas A. Boden, Pieter P. Tans, Oliver D. Andrews, Vivek Arora, Dorothee C. E. Bakker, Leticia Barbero, Meike Becker, Richard A. Betts, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Cathy Cosca, Jessica Cross, Kim Currie, Thomas Gasser, Ian Harris, Judith Hauck, Vanessa Haverd, Richard A. Houghton, Christopher W. Hunt, George Hurtt, Tatiana Ilyina, Atul K. Jain, Etsushi Kato, Markus Kautz, Ralph F. Keeling, Kees Klein Goldewijk, Arne Körtzinger, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Ivan Lima, Danica Lombardozzi, Nicolas Metzl, Frank Millero, Pedro M. S. Monteiro, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Yukihiro Nojiri, X. Antoni Padin, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Janet Reimer, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Benjamin D. Stocker, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Steven M. A. C. van Heuven, Nicolas Viovy, Nicolas Vuichard, Anthony P. Walker, Andrew J. Watson, Andrew J. Wiltshire, Sönke Zaehle, Dan Zhu, Global Carbon Budget 2017, Earth Syst. Sci. Data, 10, 405-499, 2018

2017

Internal structure and stability of vortices in a dipolar spinor Bose-Einstein condensate, Magnus O. Borgh, Justin Lovegrove, and Janne Ruostekoski, Phys. Rev. A 95, 053601, 2017
Risks and benefits of catching pretty good yield in multispecies mixed fisheries, Thorpe, R.B., Jennings, S. and Dolder, P.J. , ICES Journal of Marine Science 74(8): 2097-2106, 2017
Universal and nonuniversal aspects of vortex reconnections in superfluids, Alberto Villois, Davide Proment, and Giorgio Krstulovic, Physical Review Fluids, Volume 2, Issue 4, 044701, 2017
In situ measurements of atmospheric O-2 and CO2 reveal an unexpected O-2 signal over the tropical Atlantic Ocean, Pickers, P. A., Manning, A. C., Sturges, W. T., Le Quéré, C., Fletcher, S. E. M., Wilson, P. A., and Etchells, A. J., Glob. Biogeochem. Cycle, 31, 1289-1305, 2017
Gas-cushioned droplet impacts with a thin layer of porous media, Hicks, P.D., Purvis, R. J Eng Math 102, 65–87, 2017
The great time series classification bake off: a review and experimental evaluation of recent algorithmic advances, Bagnall, Anthony; Lines, Jason; Bostrom, Aaron; Large, James; Keogh, Eamonn, Data Mining and Knowledge Discovery, Vol. 31, No. 3, p. 606–660., May 2017
Global warming and ocean stratification: a potential result of large extraterrestrial impacts, Joshi, M., von Glasow, R., Smith, R. S., Paxton, C. G. M., Maycock, A. C., Lunt, D. J., Loptson, C. & Markwick, P., Geophysical Research Letters. 44, 8, p. 3841–3848, 2017
Mechanisms driving variability in the ocean forcing of Pine Island Glacier, Webber, B. G. M., Heywood, K. J., Stevens, D. P., Dutrieux, P., Abrahamsen, E. P., Jenkins, A., Jacobs, S. S., Ha, H. K., Lee, S. H. & Kim, T. W., 17 Feb 2017, In : Nature Communications.8, 14507.
Biogeochemical modelling of dissolved oxygen in a changing ocean, Andrews, O., Buitenhuis, E., Le Quéré, C., Suntharalingam, P.,Philosophical Transactions of the Royal Society A, 375 (2102) article no. 20160328, 2017
Shelled pteropods in peril: Assessing vulnerability in a high CO2 ocean, Manno, C., Bednaršek, N., Tarling, G. A., Peck, V. L., Comeau, S., Adhikari, D., Bakker, D. C., Bauerfeind, E., Bergan, A. J., Berning, M. I., Buitenhuis, E., Burridge, A. K., Chierici, M., Flöter, S., Fransson, A., Gardner, J., Howes, E. L., Keul, N., Kimoto, K., Kohnert, P., Lawson, G. L., Lischka, S., Maas, A., Mekkes, L., Oakes, R. L., Pebody, C., Peijnenburg, K. T., Seifert, M., Skinner, J., Thibodeau, P. S., Wall-Palmer, D., Ziveri, P., Earth-Science Reviews, 169, pp. 132-145, 2017
A re-evaluation of the magnitude and impacts of anthropogenic atmospheric nitrogen inputs on the ocean, Jickells, T. D. , Buitenhuis, E. , Altieri, K. , Baker, A. R. , Capone, D. , Duce, R. A. , Dentener, F. , Fennel, K. , Kanakidou, M. , LaRoche, J. , Lee, K. , Liss, P. , Middelburg, J. J. , Moore, J. K. , Okin, G. , Oschlies, A. , Sarin, M. , Seitzinger, S. , Sharples, J. , Singh, A., Suntharalingam, P., Uematsu, M., Zamora, L. M., Global Biogeochemical Cycles, 31, pp. 289-305, 2017
Dependence of energy flux from the wind to surface inertial currents on the scale of atmospheric motions, Zhai, X., Journal of Physical Oceanography, 47, 2711-2719, 2017
The annual cycle of surface eddy kinetic energy and its influence on eddy momentum fluxes as inferred from altimeter data, Zhai, X., Satellite Oceanography and Meteorology, 2(2):299, 2017
Decadal-mean impact of including ocean surface currents in bulk formulas on surface air-sea fluxes and ocean general circulation, Wu, Y., X. Zhai, and Z. Wang , Journal of Climate, 30, 9511-9525, 2017

2016

A conserved amino acid residue critical for product, substrate specificity in plant triterpene synthases, Salmon M, Thimmappa RB, Minto RE, Melton RE, Hughes RK, O'Maille PE, Hemmings AM, Osbourn A, Proc Natl Acad Sci USA. Jul 26;113(30):E4407-14, 2016
Evolution of a superfluid vortex filament tangle driven by the Gross–Pitaevskii equation, Alberto Villois, Davide Proment, and Giorgio Krstulovic, Physical Review E, Volume 93, Issue 6, 061103(R), 2016
On the origin of heavy-tail statistics in equations of the Nonlinear Schrödinger type, Miguel Onorato, Davide Proment, Gennady El, Stephane Randoux, Pierre Suret, Physics Letters A, Volume 380, Issue 39, 3173–3177,2016
A Vortex Filament Tracking Method for the Gross–Pitaevskii Model of a Superfluid, Alberto Villois, Giorgio Krstulovic, Davide Proment, Hayder Salman, Journal of Physics A: Mathematical and Theoretical, Volume 49, Issue 41, 415502,2016
Global Carbon Budget 2016,Le Quéré, C., Andrew, R. M., Canadell, J. G., Sitch, S., Korsbakken, J. I., Peters, G. P., Manning, A. C., Boden, T. A., Tans, P. P., Houghton, R. A., Keeling, R. F., Alin, S., Andrews, O. D., Anthoni, P., Barbero, L., Bopp, L., Chevallier, F., Chini, L. P., Ciais, P., Currie, K., Delire, C., Doney, S. C., Friedlingstein, P., Gkritzalis, T., Harris, I., Hauck, J., Haverd, V., Hoppema, M., Klein Goldewijk, K., Jain, A. K., Kato, E., Körtzinger, A., Landschützer, P., Lefèvre, N., Lenton, A., Lienert, S., Lombardozzi, D., Melton, J. R., Metzl, N., Millero, F., Monteiro, P. M. S., Munro, D. R., Nabel, J. E. M. S., Nakaoka, S. I., O'Brien, K., Olsen, A., Omar, A. M., Ono, T., Pierrot, D., Poulter, B., Rödenbeck, C., Salisbury, J., Schuster, U., Schwinger, J., Séférian, R., Skjelvan, I., Stocker, B. D., Sutton, A. J., Takahashi, T., Tian, H., Tilbrook, B., van der Laan-Luijkx, I. T., van der Werf, G. R., Viovy, N., Walker, A. P., Wiltshire, A. J., and Zaehle, S., Earth Syst. Sci. Data, 8, 605-649, 2016
Sensitivity of Pine Island Glacier to observed ocean forcing, Christianson, K., Bushuk, M., Dutrieux, P., Parizek, B. R., Joughin, I. R., Alley, R. B., Shean, D. E., Abrahamsen, E. P., Anandakrishnan, S., Heywood, K. J., Kim, T-W., Lee, S. H., Nicholls, K., Stanton, T., Truffer, M., Webber, B. G. M., Jenkins, A., Jacobs, S., Bindschadler, R. & Holland, D. M., 28 Oct 2016, In : Geophysical Research Letters. 43, 20, p. 10817-10825 9 p.
Between the Devil and the Deep Blue Sea: The Role of the Amundsen Sea Continental Shelf in Exchanges Between Ocean and Ice Shelves, Heywood, K. J., Biddle, L. C., Boehme, L., Dutrieux, P., Fedak, M., Jenkins, A., Jones, R. W., Kaiser, J., Mallett, H., Garabato, A. C. N., Renfrew, I. A., Stevens, D. P. & Webber, B. G. M., Dec 2016, In : Oceanography. 29, 4, p. 118-129 12 p.
Net primary productivity estimates and environmental variables in the Arctic Ocean: An assessment of coupled physical-biogeochemical models, Lee, Y. J., Matrai, P. A., Friedrichs, M. A. M., Saba, V. S., Aumont, O., Babin, M., Buitenhuis, E. T., Chevallier, M., de Mora, L., Dessert, M., Dunne, J. P., Ellingsen, I., Feldman, D., Frouin, R., Gehlen, M., Gorgues, T., Ilyina, T., Jin, M., John, J. G., Lawrence, J., Manizza, M., Menkes, C. E., Perruche, C., Le Fouest, V., Popova, E., Romanou, A., Samuelsen, A., Schwinger, J., Séférian, R., Stock, C. A., Tjiputra, J., Bruno Tremblay, L., Ueyoshi, K., Vichi, M., Yool, A., Zhang, J., Journal of Geophysical Research, 121, 2016
Marine regime shifts in ocean biogeochemical models: a case study in the Gulf of Alaska, Beaulieu, C., Cole, H., Henson, S., Yool, A., Anderson, T., De Mora, L., Buitenhuis, E. T., Butenschön, M., Totterdell, I. J., Allen, J. I., Biogeosciences, 13, pp. 4533-4553, 2016
Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles, Le Quéré, C., Buitenhuis, E. T., Moriarty, R., Alvain, S., Aumont, O., Bopp, L., Chollet, S., Enright, C., Franklin, D. J., Geider, R. J., Harrison, S. P., Hirst, A. G., Larsen, S., Legendre, L., Platt, T., Prentice, I. C., Rivkin, R. B., Sailley, S., Sathyendranath, S., Stephens, N., Vogt, M., Vallina, S. M., Biogeosciences, 13, pp. 4111-4133, 2016
Thermally induced convective circulation and precipitation over and isolated volcano (Poulidis AP, Renfrew IA, Matthews AJ) J. Atmos. Sci., 73, 1667-1686, 2016
Importance of ocean salinity for climate and habitability (Cullum, Jodie and Stevens, David P and Joshi, Manoj M), In Proceedings of the National Academy of Sciences, 2016
Upper-and mid-mantle interaction between the Samoan plume and the Tonga-Kermadec slabs (Chang, Sung-Joon and Ferreira, Ana MG and Faccenda, Manuele), In Nature communications, volume 7, 2016
Empirical assessment of the validity limits of the surface wave full ray theory using realistic 3-D Earth models (Parisi, Laura and Ferreira, Ana MG), In Geophysical Journal International, Oxford University Press, volume 205, 2016
Novel B (Ar′) 2 (Ar′′) hetero-tri (aryl) boranes: a systematic study of Lewis acidity (Robin J Blagg, Trevor R Simmons, Georgina R Hatton, James M Courtney, Elliot L Bennett, Elliot J Lawrence, Gregory G Wildgoose), In Dalton Transactions, Royal Society of Chemistry, 2016.
Work done by atmospheric winds on mesoscale ocean eddies, Xu, C., X. Zhai, and X.-D. Shang, Geophysical Research Letters, 43, 2016
Impact of synoptic atmospheric forcing on the mean ocean circulation, Wu, Y., X. Zhai, and Z. Wang, Journal of Climate, 29, 5709-5724, 2016
Why the South Pacific Convergence Zone is diagonal, Karin van der Wiel, Adrian J Matthews, Manoj M Joshi, David P Stevens, Climate Dynamics, 46, 1683-1698, 2016
The influence of diabatic heating in the South Pacific Convergence Zone on Rossby wave propagation and the mean flow, an der Wiel, K., A.J. Matthews, M.M. Joshi and D.P. Stevens, Quarterly Journal of the Royal Meteorological Society, 142, 901-910, 2016

2015

Time-Series Classification with COTE: The Collective of Transformation-Based Ensembles, Anthony Bagnall, Jason Lines, Jon Hills, Aaron Bostrom, IEEE Transactions on Knowledge and Data Engineering, vol. 27, no. 9, pp. 2522-2535, 1 Sept 2015
Scattering of Line-Ring Vortices in a Superfluid, Alberto Villois, Hayder Salman, Davide Proment, Journal of Low Temperature Physics, Volume 180, Issue 1, pages 68-81,2015
Global Carbon Budget 2015, Le Quéré, C., Moriarty, R., Andrew, R. M., Canadell, J. G., Sitch, S., Korsbakken, J. I., Friedlingstein, P., Peters, G. P., Andres, R. J., Boden, T. A., Houghton, R. A., House, J. I., Keeling, R. F., Tans, P., Arneth, A., Bakker, D. C. E., Barbero, L., Bopp, L., Chang, J., Chevallier, F., Chini, L. P., Ciais, P., Fader, M., Feely, R. A., Gkritzalis, T., Harris, I., Hauck, J., Ilyina, T., Jain, A. K., Kato, E., Kitidis, V., Klein Goldewijk, K., Koven, C., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lenton, A., Lima, I. D., Metzl, N., Millero, F., Munro, D. R., Murata, A., Nabel, J. E. M. S., Nakaoka, S., Nojiri, Y., O'Brien, K., Olsen, A., Ono, T., Pérez, F. F., Pfeil, B., Pierrot, D., Poulter, B., Rehder, G., Rödenbeck, C., Saito, S., Schuster, U., Schwinger, J., Séférian, R., Steinhoff, T., Stocker, B. D., Sutton, A. J., Takahashi, T., Tilbrook, B., van der Laan-Luijkx, I. T., van der Werf, G. R., van Heuven, S., Vandemark, D., Viovy, N., Wiltshire, A., Zaehle, S., and Zeng, N., Earth System Science Data, 7, 349-396, 2015
Global Carbon Budget 2014, Le Quéré, C., R. Moriarty, R. M. Andrew, G. P. Peters, P. Ciais, P. Friedlingstein, S. D. Jones, S. Sitch, P. Tans, A. Arneth, T. A. Boden, A. Bondeau, L. Bopp, Y. Bozec, J. G. Canadell, F. Chevallier, C. E. Cosca, I. Harris, M. Hoppema, R. A. Houghton, J. I. House, A. K. Jain, T. Johannessen, E. Kato, R. F. Keeling, V. Kitidis, K. Klein Goldewijk, C. Koven, C. Landa, P. Landschützer, A. Lenton, I. Lima, G. Marland, J. T. Mathis, N. Metzl, Y. Nojiri, A. Olsen, T. Ono , W. Peters, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. E. Salisbury, U. Schuster, J. Schwinger, R. Séférian, J. Segschneider, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, N. Viovy, Y.-P. Wang, R. Wanninkhof, G. van der Werf , A. Wiltshire, S. Zaehle, N. Zeng, Earth System Science Data, 6, 235-263, 2015
Nonlinear flexural waves in fluid-filled elastic channels N. Deacon, E. I. Parau, R. Purvis, R. Whittaker, J. Fluids and Structures 52 (2015), 16-36
Changes in global ocean bottom properties and volume transports in CMIP5 models under climate change scenarios,Heuzé, C., K.J. Heywood, D.P. Stevens and J.K. Ridle, Journal of Climate, 28, 2917-2944, 2015
Latitudinal dependence of wind-induced near-inertial energy, Zhai, X., Journal of Physical Oceanography, 45, 3025-3032., 2015
Drivers and uncertainties of future global marine primary production in marine ecosystem models, Laufkötter, C., Vogt, M., Gruber, N., Aita-noguchi, M., Aumont, O., Bopp, L., Buitenhuis, E., Doney, S. C., Dunne, J., Hashioka, T., Hauck, J., Hirata, T., John, J., Le Quéré, C., Lima, I. D., Nakano, H., Seferian, R., Totterdell, I., Vichi, M., Völker, C., Biogeosciences, 12, pp. 6955-6984, 2015
On the Southern Ocean CO2 uptake and the role of the biological carbon pump in the 21st century: CO2 uptake in future Southern Ocean, Hauck, J., Völker, C., Wolf-gladrow, D., Laufkötter, C., Vogt, M., Aumont, O., Bopp, L., Buitenhuis, E., Doney, S. C., Dunne, J., Gruber, N., Hashioka, T., John, J., Le Quéré, C., Lima, I. D., Nakano, H., Séférian, R., Totterdell, I., Global Biogeochemical Cycles, 29, pp. 1451-1470, 2015
High-quality lowest-frequency normal mode strain observations at the Black Forest Observatory (SW-Germany) and comparison with horizontal broad-band seismometer data and synthetics (W Zürn, AMG Ferreira, R Widmer-Schnidrig, K Lentas, L Rivera, E Clévédé), In Geophysical Journal International, Oxford University Press, volume 203, 2015.
Different atmospheric moisture divergence responses to extreme and moderate El Niños (Guangzhi Xu, Timothy J Osborn, Adrian J Matthews, Manoj M Joshi), In Climate Dynamics, Springer, 2015.
The influence of diabatic heating in the South Pacific Convergence Zone on Rossby wave propagation and the mean flow (Karin van der Wiel, Adrian J Matthews, Manoj M Joshi, David P Stevens), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, 2015.
Propagation of the Madden--Julian Oscillation and scale interaction with the diurnal cycle in a high-resolution GCM (Simon C Peatman, Adrian J Matthews, David P Stevens), In Climate Dynamics, Springer, 2015.
Validity domain of the Born approximation for seismic waveform modelling in realistic 3-D Earth structure (Laura Parisi, Ana MG Ferreira, Yann Capdeville), In Geophysical Journal International, Oxford University Press, volume 200, 2015.
Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite (Mark McMullan, Anastasia Gardiner, Kate Bailey, Eric Kemen, Ben J Ward, Volkan Cevik, Alexandre Robert-Seilaniantz, Torsten Schultz-Larsen, Alexi Balmuth, Eric Holub, others), In eLife, eLife Sciences Publications Limited, 2015.
Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference (A Mastretta-Yanes, Nils Arrigo, Nadir Alvarez, Tove H Jorgensen, D Piñero, BC Emerson), In Molecular ecology resources, Wiley Online Library, volume 15, 2015.
The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses (Agathe Jouet, Mark McMullan, Cock Oosterhout), In Molecular ecology, Wiley Online Library, 2015.
A statistical gap-filling method to interpolate global monthly surface ocean carbon dioxide data (Steve D Jones, Corinne Le Quéré, Christian Rödenbeck, Andrew C Manning, Are Olsen), In Journal of Advances in Modeling Earth Systems, Wiley Online Library, 2015.
Gas-cushioned droplet impacts with a thin layer of porous media (Peter D Hicks, Richard Purvis), In Journal of Engineering Mathematics, Springer, 2015.
Increasing vertical mixing to reduce Southern Ocean deep convection in NEMO (C Heuzé, JK Ridley, D Calvert, DP Stevens, KJ Heywood), In , 2015.
A Theoretical Investigation into the Effects of Temperature on Spatio--Temporal Dynamics of EET in the FMO Complex (Colm Gerard Gillis, Garth A Jones), In The Journal of Physical Chemistry B, ACS Publications, 2015.
Land-Sparing Agriculture Best Protects Avian Phylogenetic Diversity (David P Edwards, James J Gilroy, Gavin H Thomas, Claudia A Medina Uribe, Torbjørn Haugaasen), In Current Biology, Elsevier, volume 25, 2015.
Interannual variability of wind power input to near-inertial motions in the North Atlantic (Tina Dippe, Xiaoming Zhai, Richard J Greatbatch, Willi Rath), In Ocean Dynamics, Springer, 2015.
Nonlinear flexural waves in fluid--filled elastic channels (NP Deacon, EI P\uar\uau, R Purvis, RJ Whittaker), In Journal of Fluids and Structures, Elsevier, volume 52, 2015.
A model of genome size evolution for prokaryotes in stable and fluctuating environments (Piotr Bentkowski, Cock Van Oosterhout, Thomas Mock), In Genome biology and evolution, Oxford University Press, volume 7, 2015.
Validity domain of the Born approximation for seismic waveform modelling in realistic 3-D Earth structure (Laura Parisi, Ana M. G. Ferreira, Yann Capdeville), In Geophysical Journal International, volume 200, 2015.

2014

Global Carbon Budget 2013, Le Quéré, C., G. P. Peters, R. J. Andres, R. M. Andrew, T. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, S. Zaehle, Earth System Science Data, 6, 235-263, 2014
Air–sea CO2 flux in the Pacific Ocean for the period 1990–2009, Ishii, M., Feely, R. A., Rodgers, K. B., Park, G., Wanninkhof, R., Sasano, D., Sugimoto, H., Cosca, C. E., Nakaoka, S., Telszewski, M., Nojiri, Y., Mikaloff Fletcher, S. E., Niwa, Y., Patra, P. K., Valsala, V., Nakano, H., Lima, I., Doney, S. C., Buitenhuis, E. T., Aumont, O., Dunne, J. P., Lenton, A., Takahashi, T., Biogeosciences, 11, pp. 709-734, 2014
Sensitivity of Southern Ocean overturning to wind stress changes: Role of surface restoring time scales (Xiaoming Zhai, David R Munday), In Ocean Modelling, Elsevier, volume 84, 2014.
Joint earthquake source inversions using seismo-geodesy and 3-D earth models (J Weston, AMG Ferreira, GJ Funning), In Geophysical Journal International, Oxford University Press, 2014.
A dynamical framework for the origin of the diagonal South Pacific and South Atlantic Convergence Zones (Karin van der Wiel, Adrian J Matthews, David P Stevens, Manoj M Joshi), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, 2014.
Spatial and Temporal Scales of Sverdrup Balance* (Matthew D Thomas, Agatha M De Boer, Helen L Johnson, David P Stevens), In Journal of Physical Oceanography, volume 44, 2014.
Bayesian model comparison and parameter inference in systems biology using nested sampling (Nick Pullen, Richard J Morris), In PloS one, Public Library of Science, volume 9, 2014.
A Novel and Fast Approach for Population Structure Inference Using Kernel-PCA and Optimization (Andrei-Alin Popescu, Andrea L Harper, Martin Trick, Ian Bancroft, Katharina T Huber), In Genetics, Genetics Soc America, volume 198, 2014.
Propagation of the Madden--Julian Oscillation through the Maritime Continent and scale interaction with the diurnal cycle of precipitation (Simon C Peatman, Adrian J Matthews, David P Stevens), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, volume 140, 2014.
Time dependent hydraulic falls and trapped waves over submerged obstructions (C Page, EI Parau), In Physics of Fluids (1994-present), AIP Publishing, volume 26, 2014.
Hydraulic falls under a floating ice plate due to submerged obstructions (C Page, EI Parau), In Journal of Fluid Mechanics, Cambridge Univ Press, volume 745, 2014.
Net Community Production in the North Atlantic Ocean derived from Volunteer Observing Ship data, Clare Ostle, Martin Johnson, Peter Landschützer, Ute Schuster, Susan Hartman, Tom Hull, Carol Robinson, In Global Biogeochemical Cycles, Wiley Online Library, 2014.
The effects of different sudden stratospheric warming types on the ocean, Amee O'Callaghan, Manoj Joshi, David Stevens, Daniel Mitchell, In Geophysical Research Letters, Wiley Online Library, volume 41, 2014.
Bose-Einstein condensation and Berezinskii-Kosterlitz-Thouless transition in the two-dimensional nonlinear Schrödinger model (Sergey Nazarenko, Miguel Onorato, Davide Proment), In Physical Review A, APS, volume 90, 2014.
The surface diurnal warm layer in the Indian Ocean during CINDY/DYNAMO (Adrian J Matthews, Dariusz B Baranowski, Karen J Heywood, Piotr J Flatau, Sunke Schmidtko), In Journal of Climate, volume 27, 2014.
Gene Duplication, Population Genomics, and Species-Level Differentiation within a Tropical Mountain Shrub (Alicia Mastretta-Yanes, Sergio Zamudio, Tove H Jorgensen, Nils Arrigo, Nadir Alvarez, Daniel Piñero, Brent C Emerson), In Genome biology and evolution, Oxford University Press, volume 6, 2014.
IGCM4: a fast, parallel and flexible intermediate climate model (M Joshi, M Stringer, K van der Wiel, A O'Callaghan, S Fueglistaler), In Geoscientific Model Development Discussions, Copernicus GmbH, volume 7, 2014.
[FeFe] Hydrogenase: Protonation of {2Fe3S} Systems and Formation of Super-reduced Hydride States (Aušra Jablonskyt\.e, Joseph A Wright, Shirley A Fairhurst, Lee R Webster, Christopher J Pickett), In Angewandte Chemie International Edition, Wiley Online Library, volume 53, 2014.
Electronic control of the protonation rates of Fe--Fe bonds , Ausra Jablonskyte, Lee R Webster, Trevor R Simmons, Joseph A Wright, Christopher J Pickett, In Journal of the American Chemical Society, ACS Publications, volume 136, 2014.
Ocean processes at the Antarctic continental slope, Karen J Heywood, Sunke Schmidtko, Céline Heuzé, Jan Kaiser, Timothy D Jickells, Bastien Y Queste, David P Stevens, Martin Wadley, Andrew F Thompson, Sophie Fielding, others, In Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences, The Royal Society, volume 372, 2014.
A quantum dynamical comparison of the electronic couplings derived from quantum electrodynamics and Förster theory: application to 2D molecular aggregates(James E Frost, Garth A Jones), In New Journal of Physics, IOP Publishing, volume 16, 2014.
Nonlinear flexural waves in fluid--filled elastic channels (NP Deacon, EI P\uar\uau, R Purvis, RJ Whittaker), In Journal of Fluids and Structures, Elsevier, 2014.
The importance of planetary rotation period for ocean heat transport (Jodie Cullum, D Stevens, M Joshi), In Astrobiology, Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, volume 14, 2014.
Global radially anisotropic mantle structure from multiple datasets: a review, current challenges, and outlook (Sung-Joon Chang, Ana MG Ferreira, Jeroen Ritsema, Hendrik J van Heijst, John H Woodhouse), In Tectonophysics, Elsevier, volume 617, 2014.
Kernel learning at the first level of inference (Gavin C Cawley, Nicola LC Talbot), In Neural Networks, Elsevier, volume 53, 2014.
Information acquisition in ostensibly efficient markets (Alasdair Brown), In Economica, Wiley Online Library, 2014.
Propagation of the Madden-Julian Oscillation through the Maritime Continent and Scale Interaction with the Diurnal Cycle of Precipitation (Simon Christopher Peatman, Adrian J. Matthews, David P. Stevens), In Quarterly Journal of the Royal Meteorological Society., volume 140, 2014.
Global radially anisotropic mantle structure from multiple datasets: A review, current challenges, and outlook (Sung-Joon Chang, Ana M.G. Ferreira, Jeroen Ritsema, Hendrik J. van Heijst, John H. Woodhouse), In Tectonophysics, volume , 2014.
Kernel learning at the first level of inference (Gavin C. Cawley, Nicola L.C. Talbot), In Neural Networks, voume , 2014.

2013

Biochemical analysis of a multifunctional cytochrome P450 (CYP51) enzyme required for synthesis of antimicrobial triterpenes in plants, Geisler K, Hughes RK, Sainsbury F, Lomonossoff GP, Rejzek M, Fairhurst S, Olsen CE, Motawia MS, Melton RE, Hemmings AM, Bak S, Osbourn A. Proc Natl Acad Sci U S A. 2013;110(35):E3360-7., 2013
The Global Carbon Budget 1959–2011, Le Quéré, C., R. Andres, T. Boden, T. Conway, R. Houghton, J. House, G. Marland, G. Peters, G. van der Werf, A. Ahlström, R. Andrew, L. Bopp, J. Canadell, P. Ciais, S. Doney, P. Friedlingstein, C. Huntingford, A. Jain, C. Jourdain, E. Kato, R. Keeling, K. Klein Goldewijk, S. Levis, P. Levy, M. Lomas, B. Poulter, M. Raupach, J. Schwinger, S. Sitch, B. Stocker, N. Viovy, S. Zaehle and N. Zeng, Earth System Science Data, 5, 165-186, 2013
The impact of temperature on marine phytoplankton resource allocation and metabolism (ADSJ Toseland, Stuart J Daines, James R Clark, Amy Kirkham, Jan Strauss, Christiane Uhlig, Timothy M Lenton, Klaus Valentin, Gareth A Pearson, Vincent Moulton, others), In Nature Climate Change, nature publishing group, volume 3, 2013.
Eddy-induced variability of the meridional overturning circulation in a model of the North Atlantic (MD Thomas, X Zhai), In Geophysical Research Letters, Wiley Online Library, volume 40, 2013.
A recent tipping point in the Arctic sea-ice cover: abrupt and persistent increase in the seasonal cycle since 2007 (V. N. Livina, T. M. Lenton), In The Cryosphere, volume 7, 2013.
MIMOC: A global monthly isopycnal upper-ocean climatology with mixed layers (Sunke Schmidtko, Gregory C Johnson, John M Lyman), In Journal of Geophysical Research: Oceans, Wiley Online Library, volume 118, 2013
Gold peroxide complexes and the conversion of hydroperoxides into gold hydrides by successive oxygen-transfer reactions (Dragocs-Adrian Rocsca, Joseph A Wright, David L Hughes, Manfred Bochmann), In Nature communications, Nature Publishing Group, volume 4, 2013.
Reconstructing paternal genotypes to infer patterns of sperm storage and sexual selection in the hawksbill turtle (Karl P Phillips, Tove H Jorgensen, Kevin G Jolliffe, San-Marie Jolliffe, Jock Henwood, David S Richardson), In Molecular ecology, Wiley Online Library, volume 22, 2013.
The impact of temperature on marine phytoplankton resource allocation and metabolism (GA Pearson, V Moulton, T Mock), In , 2013.
Majoritarian Contests with Asymmetric Battlefields: An Experiment (Maria Montero, Alex Possajennikov, Martin Sefton, Theodore Turocy), In Available at SSRN 2369056, 2013.
The effect of the Madden-Julian Oscillation on station rainfall and river level in the Fly River system, Papua New Guinea (Adrian J Matthews, Geoff Pickup, Simon C Peatman, Peter Clews, Jason Martin), In Journal of Geophysical Research: Atmospheres, Wiley Online Library, volume 118, 2013.
Forecasting the underlying potential governing the time series of a dynamical system (VN Livina, Gerrit Lohmann, Manfred Mudelsee, TM Lenton), In Physica A: Statistical Mechanics and its Applications, Elsevier, volume 392, 2013.
Assessment of SCARDEC source parameters of global large (Mw≥ 7.5) subduction earthquakes (K Lentas, AMG Ferreira, Martin Vallée), In Geophysical Journal International, Oxford University Press, volume 195, 2013.
Molecular characterization of trophic ecology within an island radiation of insect herbivores (Curculionidae: Entiminae: Cratopus) (James JN Kitson, Ben H Warren, FB Vincent Florens, Claudia Baider, Dominique Strasberg, Brent C Emerson), In Molecular ecology, Wiley Online Library, volume 22, 2013.
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding (Yinqiu Ji, Louise Ashton, Scott M Pedley, David P Edwards, Yong Tang, Akihiro Nakamura, Roger Kitching, Paul M Dolman, Paul Woodcock, Felicity A Edwards, others), In Ecology letters, Wiley Online Library, volume 16, 2013.
Molecular phylogenetic analysis of archival tissue reveals the origin of a disjunct southern African--Palaearctic weevil radiation (Gerardo Hernández-Vera, Roberto Caldara, Ivo Toševski, Brent C Emerson), In Journal of Biogeography, Wiley Online Library, volume 40, 2013.
Nonlinear climate responses to changes in Antarctic Intermediate Water (Jennifer A Graham, David P Stevens, Karen J Heywood), In Journal of Climate, volume 26, 2013.
Biochemical analysis of a multifunctional cytochrome P450 (CYP51) enzyme required for synthesis of antimicrobial triterpenes in plants (Katrin Geisler, Richard K Hughes, Frank Sainsbury, George P Lomonossoff, Martin Rejzek, Shirley Fairhurst, Carl-Erik Olsen, Mohammed Saddik Motawia, Rachel E Melton, Andrew M Hemmings, others), In Proceedings of the National Academy of Sciences, National Acad Sciences, volume 110, 2013.
How well does the ERA-Interim reanalysis replicate trends in extremes of surface temperature across Europe? (RC Cornes, PD Jones), In Journal of Geophysical Research: Atmospheres, Wiley Online Library, volume 118, 2013.
Combined constraints on global ocean primary production using observations and models (Erik T Buitenhuis, Taketo Hashioka, Corinne Le Quéré), In Global Biogeochemical Cycles, Wiley Online Library, 2013.
Riverine influence on the tropical Atlantic Ocean biogeochemistry (L. C. da Cunha, E. T. Buitenhuis), In Biogeosciences, volume 10, 2013. [pdf] [doi]
Forecasting the underlying potential governing the time series of a dynamical system (V.N. Livina, G. Lohmann, M. Mudelsee, T.M. Lenton), In Physica A: Statistical Mechanics and its Applications, volume , 2013.
How well does the ERA-Interim reanalysis replicate trends in extremes of surface temperature across Europe? (R. C. Cornes, P. D. Jones), In Journal of Geophysical Research: Atmospheres, 2013.
Eddy-induced variability of the Meridional Overturning Circulation in a model of the North Atlantic (M. D. Thomas, X. Zhai), In Geophysical Research Letters, 2013.
Electrochemistry of Au(II) and Au(III) pincer complexes: determination of the Au(II)-Au(II) bond energy (Thomas Dann, Drago.-Adrian Ro.ca, Joseph A. Wright, Gregory G. Wildgoose, Manfred Bochmann), In Chem. Commun., volume 49, 2013.
Gold peroxide complexes and the conversion of hydroperoxides into gold hydrides by successive oxygen-transfer reactions (Drago.-Adrian Ro.ca, Joseph A. Wright, David L. Hughes, Manfred Bochmann), In Nat. Commun., volume 4, 2013.

2012

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring (D.W. Yu, Y. Ji, B.C. Emerson, X. Wang, C. Ye, C. Yang, Z. Ding), In Methods in Ecology and Evolution, Wiley Online Library, 2012.
Systematic comparisons of earthquake source models determined using InSAR and seismic data (J. Weston, A.M.G. Ferreira, G.J. Funning), In Tectonophysics, Elsevier, 2012.
Ocean Rossby waves as a triggering mechanism for primary Madden--Julian events (Benjamin GM Webber, Adrian J Matthews, Karen J Heywood, David P Stevens), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, volume 138, 2012.
Dynamical Ocean forcing of the Madden-Julian Oscillation at lead times of up to five months (Benjamin GM Webber, David P Stevens, Adrian J Matthews, Karen J Heywood), In Journal of Climate, volume 25, 2012.
Climate impacts on the structures of the North Pacific air-sea CO 2 flux variability (V Valsala, S Maksyutov, M Telszewski, S Nakaoka, Y Nojiri, M Ikeda, R Murtugudde), In Biogeosciences, Copernicus GmbH, volume 9, 2012.
Upper ocean manifestations of a reducing meridional overturning circulation (MD Thomas, AM Boer, DP Stevens, HL Johnson), In Geophysical Research Letters, Wiley Online Library, volume 39, 2012.
Quantifying the impact of anthropogenic nitrogen deposition on oceanic nitrous oxide (P. Suntharalingam, E. Buitenhuis, C. Le Quéré, F. Dentener, C. Nevison, J.H. Butler, H.W. Bange, G. Forster), In Geophysical Research Letters, American Geophysical Union, volume 39, 2012.
Using dispersal information to model the species--environment relationship of spreading non-native species (Martin JP Sullivan, Richard G Davies, Luís Reino, Aldina Franco), In Methods in Ecology and Evolution, Wiley Online Library, volume 3, 2012.
Simulation evaluation of statistical properties of methods for indirect and mixed treatment comparisons (Fujian Song, Allan Clark, Max O Bachmann, Jim Maas), In BMC medical research methodology, BioMed Central Ltd, volume 12, 2012.
Gap solitary waves in two-layer fluids (Emilian I Parau, Hugh C Woolfenden), IMA J. Applied Maths.77(2012), 399-407.
Toroidal free oscillations of the Earth observed by a ring laser system: a comparative study (MF Nader, H. Igel, A.M.G. Ferreira, D. Kurrle, J. Wassermann, KU Schreiber), In Journal of Seismology, Springer, 2012.
Padua point interpolation and Lp-norm minimisation in colour-based image indexing and retrieval (R Montagna, GD Finlayson), In IET image processing, IET, volume 6, 2012.
A multiscale framework for the origin and variability of the South Pacific Convergence Zone (Adrian J Matthews), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, volume 138, 2012.
A recent tipping point in the Arctic sea-ice cover: abrupt and persistent increase in the seasonal cycle since 2007 (Valerie N Livina, Timothy M Lenton), In arXiv preprint arXiv:1204.5445, 2012.
An independent test of methods of detecting system states and bifurcations in time-series data (VN Livina, PD Ditlevsen, TM Lenton), In Physica A: Statistical Mechanics and its Applications, Elsevier, volume 391, 2012.
Forecasting the underlying potential governing climatic time series (VN Livina, G. Lohmann, M. Mudelsee, TM Lenton), In arXiv preprint arXiv:1212.4090, 2012.
Generation of leaf shape through early patterns of growth and tissue polarity (E.E. Kuchen, S. Fox, P. Barbier de Reuille, R. Kennaway, S. Bensmihen, J. Avondo, G.M. Calder, P. Southam, S. Robinson, A. Bangham, others), In Science Signalling, AAAS, volume 335, 2012.
Autocorrelation characteristics of surface ocean pCO2and air-sea CO2 fluxes (SD Jones, C Le Quéré, C Rödenbeck), In Global Biogeochemical Cycles, Wiley Online Library, volume 26, 2012.
Synthesis and Structure of Amido-and Imido (pentafluorophenyl) borane Zirconocene and Hafnocene Complexes: N H and B H Activation (Elizabeth A Jacobs, Anna Fuller, Simon J Coles, Garth A Jones, Graham J Tizzard, Joseph A Wright, Simon J Lancaster), In Chemistry-A European Journal, Wiley Online Library, volume 18, 2012.
Southern Ocean fronts: Controlled by wind or topography? (Robert M Graham, Agatha M Boer, Karen J Heywood, Mark R Chapman, David P Stevens), In Journal of Geophysical Research: Oceans (1978--2012), Wiley Online Library, volume 117, 2012.
The structure and chemistry of tris (pentafluorophenyl) borane protected mononuclear nitridotitanium complexes (Anna-Marie Fuller, David L Hughes, Garth A Jones, Simon J Lancaster), In Dalton Transactions, Royal Society of Chemistry, volume 41, 2012.
Importance of oceanic resolution and mean state on the extra-tropical response to El Niño in a matrix of coupled models (Andrew Dawson, Adrian J Matthews, David P Stevens, Malcolm J Roberts, Pier Luigi Vidale), In Climate Dynamics, Springer, 2012.
Thermal growing season and timing of biospheric carbon uptake across the Northern Hemisphere (J. Barichivich, KR Briffa, TJ Osborn, TM Melvin, J. Caesar), In Global Biogeochemical Cycles, American Geophysical Union, volume 26, 2012.
Detecting an external influence on recent changes in oceanic oxygen using an optimal fingerprinting method (OD Andrews, NL Bindoff, PR Halloran, T. Ilyina, C. Le Quéré), In Biogeosciences Discuss, volume 9, 2012.
Phylogeography and molecular phylogeny of Macaronesian island Tarphius (Coleoptera: Zopheridae): why are there so few species in the Azores? (Isabel R Amorim, Brent C Emerson, Paulo AV Borges, Robert K Wayne), In Journal of Biogeography, Wiley Online Library, volume 39, 2012.
Excitation energy transfer and Low-efficiency photolytic splitting of water Ice by vacuum UV light (Angela Acocella, Garth A Jones, Francesco Zerbetto), In The Journal of Physical Chemistry Letters, ACS Publications, volume 3, 2012.
An independent test of methods of detecting system states and bifurcations in time-series data (V.N. Livina, P.D. Ditlevsen, T.M. Lenton), In Physica A: Statistical Mechanics and its Applications, volume 391, 2012.
Phylogeography and molecular phylogeny of Macaronesian island Tarphius (Coleoptera: Zopheridae): why are there so few species in the Azores? (Isabel R. Amorim, Brent C. Emerson, Paulo A. V. Borges, Robert K. Wayne), In Journal of Biogeography, Blackwell Publishing Ltd, volume 39, 2012.

2011

Numerical computation of solitary waves in a two-layer fluid (HC Woolfenden, EI Parau), In Journal of Fluid Mechanics, Cambridge Univ Press, volume 688, 2011.
Motion of a two-dimensional elastic capsule in a branching channel flow (HC Woolfenden, MG Blyth), In Journal of Fluid Mechanics, Cambridge Univ Press, volume 669, 2011.
Climate impacts on the structures of the North Pacific air-sea CO2 flux variability (V Valsala, S Maksyutov, M Telszewski, SI Nakaoka, Y Nojiri, M Ikeda, R Murtugudde), In Biogeosciences Discussions, volume 8, 2011.
SCARDEC: a new technique for the rapid determination of seismic moment magnitude, focal mechanism and source time functions for large earthquakes using body-wave deconvolution (Martin Vallée, Jean Charléty, Ana MG Ferreira, Bertrand Delouis, Julien Vergoz), In Geophysical Journal International, Oxford University Press, volume 184, 2011.
Generation of spatial patterns through cell polarity switching (S. Robinson, P. Barbier de Reuille, J. Chan, D. Bergmann, P. Prusinkiewicz, E. Coen), In Science Signalling, AAAS, volume 333, 2011.
Three-dimensional waves beneath an ice sheet due to a steadily moving pressure (Emilian I P\uar\uau, Jean-Marc Vanden-Broeck), In Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, The Royal Society, volume 369, 2011.
A model study of the energy and mass balance of Chhota Shigri glacier in the Western Himalaya, India (F Pithan), In The Cryosphere Discussions, Copernicus GmbH, volume 5, 2011.
A general approach for prediction of motional EPR spectra from Molecular Dynamics (MD) simulations: application to spin labelled protein (V.S. Oganesyan), In Physical Chemistry Chemical Physics, Royal Society of Chemistry, volume 13, 2011.
The diurnal cycle of precipitation over the Maritime Continent in a high-resolution atmospheric model (Barnaby S Love, Adrian J Matthews, Grenville Lister), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, volume 137, 2011.
Generation of diverse biological forms through combinatorial interactions between tissue polarity and growth (R. Kennaway, E. Coen, A. Green, A. Bangham), In PLoS computational biology, Public Library of Science, volume 7, 2011.
Simulation of the beta-to alpha-sheet transition results in a twisted sheet for antiparallel and an alpha-nanotube for parallel strands: Implications for amyloid formation (Steven Hayward, E James Milner-White), In Proteins: Structure, Function, and Bioinformatics, Wiley Online Library, volume 79, 2011.
Wind forcing of salinity anomalies in the Denmark Strait overflow (S Hall, SR Dye, KJ Heywood, MR Wadley), In Ocean Science, Copernicus GmbH, volume 7, 2011.
North Atlantic climate responses to perturbations in Antarctic Intermediate Water (Jennifer A Graham, David P Stevens, Karen J Heywood, Zhaomin Wang), In Climate dynamics, Springer, volume 37, 2011.
Global compilation of interferometric synthetic aperture radar earthquake source models: 2. Effects of 3-D Earth structure (AMG Ferreira, J Weston, GJ Funning), In Journal of Geophysical Research: Solid Earth (1978--2012), Wiley Online Library, volume 116, 2011.
Diet and bone mineral density study in postmenopausal women from the TwinsUK registry shows a negative association with a traditional English dietary pattern and a positive association with wine (Susan J Fairweather-Tait, Jane Skinner, Geoffrey R Guile, Aedín Cassidy, Tim D Spector, Alex J MacGregor), In The American journal of clinical nutrition, Am Soc Nutrition, volume 94, 2011.
Rossby wave dynamics of the North Pacific extra-tropical response to El Niño: importance of the basic state in coupled GCMs (A. Dawson, A.J. Matthews, D.P. Stevens), In Climate dynamics, Springer, volume 37, 2011.

2010

Evolutionary regime shifts in simulated ecosystems (H.T.P. Williams, T.M. Lenton), In Oikos, Wiley Online Library, volume 119, 2010.
Incorporating cultural representations of features into audio music similarity estimation (K. West, S. Cox), In Audio, Speech, and Language Processing, IEEE Transactions on, IEEE, volume 18, 2010.
A dynamical ocean feedback mechanism for the Madden--Julian Oscillation (B.G.M. Webber, A.J. Matthews, K.J. Heywood), In Quarterly Journal of the Royal Meteorological Society, Wiley Online Library, volume 136, 2010.
Comparison of the emergent behavior of a complex ecosystem model in two ocean general circulation models (B. Sinha, E.T. Buitenhuis, C.L. Quéré, T.R. Anderson), In Progress in Oceanography, Elsevier, volume 84, 2010.
Challenges of modeling depth-integrated marine primary productivity over multiple decades: A case study at BATS and HOT (V.S. Saba, M.A.M. Friedrichs, M.E. Carr, D. Antoine, R.A. Armstrong, I. Asanuma, O. Aumont, N.R. Bates, M.J. Behrenfeld, V. Bennington, others), In , American Geophysical Union, 2010.
Time evolution of three-dimensional nonlinear gravity--capillary free-surface flows (EI Puaruau, JM Vanden-Broeck, MJ Cooker), In Journal of Engineering Mathematics, Springer, volume 68, 2010.
Ocean temperature and salinity components of the Madden--Julian oscillation observed by Argo floats (A.J. Matthews, P. Singhruck, K.J. Heywood), In Climate dynamics, Springer, volume 35, 2010.
Potential analysis reveals changing number of climate states during the last 60 kyr (V.N. Livina, F. Kwasniok, T.M. Lenton), In Climate of the Past, Copernicus GmbH, volume 6, 2010.
Impact of climate change and variability on the global oceanic sink of CO2 (C. Le Quéré, T. Takahashi, E.T. Buitenhuis, C. Rödenbeck, S.C. Sutherland), In Global Biogeochemical Cycles, American Geophysical Union, volume 24, 2010.
Coupled land-atmosphere intraseasonal variability of the West African monsoon in a GCM (S.L. Lavender, C.M. Taylor, A.J. Matthews), In Journal of Climate, volume 23, 2010.
Finding stable salient contours (Y. Lan, R. Harvey, J.R. Perez Torres), In Image and Vision Computing, Elsevier, volume 28, 2010.
Air cushioning and bubble entrapment in three-dimensional droplet impacts (P.D. Hicks, R. Purvis), In Journal of Fluid Mechanics, Cambridge Univ Press, volume 649, 2010.
The Effect of End Constraints on Protein Loop Kinematics (S. Hayward, A. Kitao), In Biophysical journal, The Biophysical Society, volume 98, 2010.
Genetic control of organ shape and tissue polarity (A.A. Green, J.R. Kennaway, A.I. Hanna, J.A. Bangham, E. Coen), In PLoS biology, Public Library of Science, volume 8, 2010.
On the robustness of global radially anisotropic surface wave tomography (AMG Ferreira, JH Woodhouse, K Visser, J Trampert), In Journal of Geophysical Research: Solid Earth (1978--2012), Wiley Online Library, volume 115, 2010.
Meridional density gradients do not control the Atlantic overturning circulation (A.M. De Boer, A. Gnanadesikan, N.R. Edwards, A.J. Watson), In Journal of Physical Oceanography, volume 40, 2010.
Impact of stratospheric variability on tropospheric climate change (M. Dall.Amico, P.A. Stott, A.A. Scaife, L.J. Gray, K.H. Rosenlof, A.Y. Karpechko), In Climate dynamics, Springer, volume 34, 2010.
A model of phytoplankton acclimation to iron-light colimitation (E.T. Buitenhuis, R.J. Geider), In Limnology and Oceanography, volume 55, 2010.
Biogeochemical fluxes through microzooplankton (E.T. Buitenhuis, R.B. Rivkin, S. Sailley, C. Le Quéré), In Global biogeochemical cycles, American Geophysical Union, volume 24, 2010.
Marine ecosystem models for earth systems applications: The MarQUEST experience (J. Allen, J. Aiken, T.R. Anderson, E. Buitenhuis, S. Cornell, R.J. Geider, K. Haines, T. Hirata, J. Holt, C. Le Quéré, others), In Journal of Marine Systems, Elsevier, volume 81, 2010.
The Collective of Transformation-Based Ensembles for Time-Series Classification (Jason Lines, Jon Hills, Anthony Bagnall), In .
Super-reduced Hydride States* (Aušra Jablonskyte, Joseph A Wright, Shirley A Fairhurst, Lee R Webster, Christopher J Pickett), In , Wiley Online Library.
Time-Series Classification with COTE: The Collective of Transformation-Based Ensembles (Anthony Bagnall, Jason Lines, Jon Hills, Aaron Bostrom), In , IEEE.

Conference Papers

Peridynamic Modelling of Cracking in TRISO Coated Particle Fuel for High Temperature Reactor (HTRs) – The Importance of Residual Stresses to the Crack Patterns Formed, Haynes TA, Battistini A, Wenman MR, The International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering August 13 – 17, 2023
The Temporal Dictionary Ensemble (TDE) Classifier for Time Series Classification, Matthew Middlehurst, James Large, Gavin Cawley & Anthony Bagnall, 2021
The Canonical Interval Forest (CIF) Classifier for Time Series Classification, M. Middlehurst, J. Large and A. Bagnall,2020 IEEE International Conference on Big Data (Big Data), 2020
Mixing Hetero- and Homogeneous Models in Weighted Ensembles, James Large & Anthony Bagnall, 2019
Classifying Flies Based on Reconstructed Audio Signals, Michael Flynn & Anthony Bagnall, 2019
Scalable Dictionary Classifiers for Time Series Classification, Matthew Middlehurst, William Vickers & Anthony Bagnall, 2019
The Contract Random Interval Spectral Ensemble (c-RISE): The Effect of Contracting a Classifier on Accuracy, Michael Flynn, James Large & Tony Bagnall, 2019
Can Automated Smoothing Significantly Improve Benchmark Time Series Classification Algorithms?, James Large, Paul Southam & Anthony Bagnall, 2019
Convolutional Mean: A Simple Convolutional Neural Network for Illuminant Estimation, Gong, Han, British Machine Vision Conference, 2019
Benchmarking the semi-supervised naïve Bayes classifier (Saeed, Awat A., Gavin C. Cawley, and Anthony Bagnall), Neural Networks (IJCNN), 2015 International Joint Conference on. IEEE, 2015
Torus quantum vortex knots in the Gross-Pitaevskii model for Bose-Einstein condensates (Davide Proment, Miguel Onorato, Carlo F Barenghi), In Journal of Physics: Conference Series, volume 544, 2014.
Modelling the role of spontaneous and collision induced catastrophe in the self organisation of cortical microtubules (Alex Mace, Wenjia Wang), In Bioinformatics and Biomedicine (BIBM), 2014 IEEE International Conference on, 2014.
Computing a Consensus of Multilabeled Trees. (Katharina T Huber, Vincent Moulton, Andreas Spillner, Sabine Storandt, Radoslaw Suchecki), In ALENEX, 2012.
Three-dimensional nonlinear waves under an ice sheet and related flows (Emilian I Parau, Jean-Marc Vanden-Broeck), In Proceedings of the 21st International Offshore and Polar Engineering Conference (ISOPE), Maui, Hawaii, USA (ISOPE, 2011), 2011.
Speaker independent visual-only language identification (J.L. Newman, S.J. Cox), In Acoustics Speech and Signal Processing (ICASSP), 2010 IEEE International Conference on, 2010.
Hierarchical language modeling for audio events detection in a sports game (Q. Huang, S. Cox), In Acoustics Speech and Signal Processing (ICASSP), 2010 IEEE International Conference on, 2010.
Global biogeochemical fluxes through microzooplankton (ET Buitenhuis, RB Rivkin, S. Sailley, C. Le Quere), In Proceedings from the 2010 AGU Ocean Sciences Meeting, 2010.

Other Publications

The FreshPRINCE: A Simple Transformation Based Pipeline Time Series Classifier, Matthew Middlehurst & Anthony Bagnall, 2022
Evaluating Improvements to the Shapelet Transform, Aaron Bostrom, Anthony Bagnall and Jason Lines
Detecting Forged Alcohol Non-invasively Through Vibrational Spectroscopy and Machine Learning, Large, James; Kemsley, E Kate; Wellner, Nikolaus; Goodall, Ian; Bagnall, Anthony. PAKDD 2018: Advances in Knowledge Discovery and Data Mining. ed. Dinh Phung; Vincent S. Tseng; Geoffrey I. Webb; Bao Ho; Mohadeseh Ganji; Lida Rashidi. Springer, p 298-309, 2018
Adverse Selection, Speed Bumps and Asset Market Quality (Alasdair Brown, Fuyu Yang, others), Technical report, School of Economics, University of East Anglia, Norwich, UK., 2015.
Predicting the distribution and impacts of non-native birds in the Iberian Peninsula (Martin John Patrick Sullivan), PhD thesis, University of East Anglia, 2014.
Majoritarian Blotto Contests with Asymmetric Battlefields: An Experiment on Apex Games (Maria Montero, Alex Possajennikov, Martin Sefton, Theodore L Turocy), Economic Theory 61(1): 55-89.
The Role of Speculative Trade in Market Efficiency: Evidence from a Betting Exchange (Alasdair Brown, Fuyu Yang), Technical report, School of Economics, University of East Anglia, Norwich, UK., 2014.
The Design of a Contemporary Infrastructure for Scalable and Consistent Virtual Worlds (Umar Farooq), PhD thesis, University of East Anglia, 2012.
Investigating Randomised Sphere Covers in Supervised Learning (Reda Younsi), PhD thesis, University of East Anglia, 2011.
Molecular Phylogenetic Analysis of Host Use and Biogeography Within the Genus Rhinusa and the Related Genus Gymnetron (Coleoptera: Curculionidae) (Gerardo Hernández Vera), PhD thesis, University of East Anglia, 2011.
On the Oceanic Impacts of Greenland’s Tip Jets (David Sproson), PhD thesis, University of East Anglia, 2011.
Global climate impacts from changes in Antarctic Intermediate Water (Jennifer A Graham), PhD thesis, University of East Anglia, 2011.
Weathering effects on the carbon cycle in an Earth System Model (Greg Colbourn), PhD thesis, University of East Anglia, 2011.