A selection of our key publications A selection of our key publications


Mateusz M. Wydro, Pia Sharma, Jonathan M. Foster, Katrine Bych, Etienne H. Meyer and Janneke Balk (2013) The evolutionary conserved IND1-homologue is required for complex I assembly and mitochondrial translation in Arabidopsis. The Plant Cell (in press)
Fitzgibbon, J., Beck, M., Zhou, J., Faulkner, C., Robatzek, S. and Oparka, K. (2013) A developmental framework for complex plasmodesmata formation revealed by large-scale imaging of the Arabidopsis leaf epidermis. Plant Cell. 25: 57-70. doi: 10.1105/tpc.112.105890
Faulkner C, Petutschnig E, Benitez-Alfonso Y, Beck M, Robatzek S, Lipka V, Maule AJ. (2013) LYM2-dependent chitin perception limits molecular flux via plasmodesmata. Proc Natl Acad Sci U S A. 2013 May 28;110(22):9166-70. doi: 10.1073/pnas
Nicaise V, Joe A, Jeong B, Korneli C, Boutrot F, Westedt I, Staiger D, Alfano J and Zipfel C (2013) Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7. EMBO J, 32:701-712.


Luo D, Bernard DG, Balk J, Hai H and Cui X (2012) The DUF59 family gene AE7 acts in the cytosolic iron-sulfur cluster assembly pathway to maintain nuclear genome integrity in Arabidopsis. The Plant Cell, in press
Tomato Genome Consortium (incl. Mohorianu, I and Dalmay, T) (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485(7400):635-41.
Heliconius Genome Consortium (incl. Moxon, S and Dalmay, T) (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 487(7405):94-8.
Beck M, Zhou J, Faulkner C, MacLean D, Robatzek S. (2012) Spatio-temporal cellular dynamics of the Arabidopsis flagellin receptor reveal activation status-dependent endosomal sorting. Plant Cell. 2012 Oct;24(10):4205-19. doi: 10.1105/tpc.
Albrecht, C, Boutrot, F, Segonzac, C, Schwessinger, B, Gimenez-Ibanez, S, Chinchilla, D, Rathjen, JP, de Vries, SC and Zipfel, C (2012)Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signalling independent of the receptor kinase BAK1.Proceedings of the National Academy of Sciences, 109 (1). pp. 303-308. ISSN 0027-8424


Mohorianu, I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S, Szittya, G, Sorefan, K, Moulton, V and Dalmay, T (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. Plant Journal, 67(2):232-46.
Kawashima, C., Matthewman, C.,Huang, S.,Lee, BR., Yoshimoto, N., Koprivova, A., Rubio-Somoza, I., Todesco, M., Rathjen, T., Saito, K., Takahashi, H., #Dalmay, T., #Kopriva, S. (2011) Interplay of SLIM1 and miR395 in regulation of sulfate assimilation in Arabidopsis. Plant Journal, 66(5):863-76 (# joint corresponding authors)
Estavillo, GM, Crisp, PA, Pornsiriwong, W, Wirtz, M, Collinge, D, Carrie, C, Giraud, E, Whelan, J, David, P, Javot, H, Brearley, C, Hell, R, Marin, E and Pogson, BJ (2011) Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling in Arabidopsis. The Plant Cell Online, 23 (11). pp. 3992-4012. ISSN 1040-4651
Kemen, E, Gardiner, A, Schultz-Larsen, T, Kemen, AC, Balmuth, A, Robert-Seilaniantz, A, Bailey, K, Holub, E, Studholme, DJ, Maclean, D andJones, JD (2011) Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biology, 9 (7). e1001094.
 Schwessinger, B, Roux, M, Kadota, Y, Ntoukakis, V, Sklenar, J, Jones, A and Zipfel, C (2011) Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1. PLoS Genetics, 7 (4). e1002046. ISSN 1553-7404


Teschner, J., Lachmann, N., Schulze, J., Geisler, M., Selbach, K., Santamaria-Araujo, J., Balk, J., Mendel, R. R. and Bittner, F. (2010) A Novel Role for Arabidopsis Mitochondrial ABC Transporter ATM3 in Molybdenum Cofactor Biosynthesis. THE PLANT CELL ONLINE, 22 (2). pp. 468-480.
Robson, F, Okamoto, H, Patrick, E, Harris, S-R, Wasternack, C, Brearley, CA and Turner, JG (2010) Jasmonate and Phytochrome - A signaling in Arabidopsis wound and shade responses are integrated through JAZ1 stability. Plant Cell, 22 (4). pp. 1143-1160.
Li, J, Dudas, B, Webster, M, Cook, H, Davies, B and Gilmartin, PM (2010) Hose in Hose, an S locus-linked mutant of Primula vulgaris is caused by an unstable mutation at the Globosa locus. Proceedings of the National Academy of Sciences of the United States of America (PNAS) ISSN 1091-6490, 107. pp. 5664-5668.
Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent, Burgyan, Jozsef and Dalmay, Tamas (2010) Structural and Functional Analysis of Viral siRNAs. PLoS Pathogens, 6 (4). e1000838.
Gonzalez, B, Banos-Sanza, JI, Villatea, M, Brearley, CA and Sanz-Aparicio, J (2010) Inositol 1,3,4,5,6-pentakisphosphate 2-kinase is a distant IPK member with a singular inositide binding site for axial 2-OH recognition. Proceedings of the National Academy of Sciences, 107 (21). pp. 9608-9613.
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, #Dalmay T and #Burgyan J (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. Plant Journal, 62(6):960-76. (# joint corresponding authors)
Raffaele, S, Farrer, RA, Cano Mogrovejo, LM, Studholme, DJ, MacLean, D, Thines, M, Jiang, RHY, Zody, MC, Kunjeti, SG, Donofrio, NM,Meyers, BC, Nusbaum, C and Kamoun, S (2010) Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage.Science, 330 (6010). pp. 1540-1543. ISSN 0036-8075
Schornack, S, Van Damme, M, Bozkurt, TO, Cano Mogrovejo, LM, Smoker, M, Thines, M, Gaulin, E, Kamoun, S and Huitema, E (2010) Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, 107 (40). pp. 17421-17426. ISSN 0027-8424
Lacombe S, Rougon-Cardoso A, Sherwood E, Peeters N, Dahlbeck D, van Esse HP, Smoker M, Rallapalli G, Thomma BPHJ, Staskawicz B, Jones JDG and Zipfel C (2010) Inter-family transfer of a plant pattern recognition receptor confers broad-spectrum bacterial resistance. Nature Biotechnology, 4 :365-369.


Ahmed, S, Compton, SG, Butlin, RK and Gilmartin, PM (2009) Wind-borne insects mediate directional pollen transfer between desert fig trees 160 kilometres apart. Proceedings of the National Academy of Sciences of the United States of America (PNAS) ISSN 1091-6490, 106. pp. 20342-20347.
Mencía, A., Modamio-Høybjør, S., Redshaw, N., Morín, M., Mayo-Merino, F., Olavarrieta, L., Aguirre, LA., del Castillo, I., Steel, KP., Dalmay, T., Moreno,  F. and Moreno-Pelayo, MA. (2009) Mutations in the seed region of the human miR-96 are responsible for non-syndromic progressive hearing loss. Nature Genetics, 41(5):609-13.
Kawashima, CG., Yoshimoto, N., Maruyama-Nakashita, A., Tsuchiya, Y., Saito, K., Takahashi, H. and Dalmay, T. (2009) Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant Journal, 57(2):313-21.
Lewis, M., Quint, E., Glazier, AM., Fuchs, H., De Angelis, MH., Langford, C., Van Dongen, S., Abreu-Goodger, C., Piipari, M., Redshaw, N., Dalmay, T., Moreno Pelayo, MA., Enright, A. and Steel, KP. (2009) An ENU-induced mutation of a miRNA associated with progressive hearing loss. Nature Genetics, 41(5):614-8.
Li J, Zhao-Hui C, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C, Jones JD. (2009) Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR.  Proc Natl Acad Sci U S A. 106:15973-8
Song, J, Win, J, Tian, M, Schornack, S, Kaschani, F, Ilyas, M, van der Hoorn, RAL and Kamoun, S (2009) Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defence protease Rcr3. Proceedings of the National Academy of Sciences, 106 (5). pp. 1654-1659. ISSN 0027-8424


Moxon, S, Jing, R, Szittya, G, Schwach, F, Rusholme Pilcher, RL, Moulton, V and Dalmay, T (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609.
Bych, K, Kerscher, S, Netz, DJA, Pierik, AJ, Zwicker, K, Huynen, MA, Lill, R, Brandt, U and Balk, J (2008) The iron–sulphur protein Ind1 is required for effective complex I assembly. The EMBO Journal, 27 (12). pp. 1736-1746. ISSN 0261-4189
Csorba T, Bovi A, *Dalmay T, *Burgyan J. (2007) The p122 subunit of Tobacco mosaic virus replicase is a potent silencing suppressor and compromises both siRNA and miRNA mediated pathways. J Virol. 81(21):11768-80 (*joint corresponding authors)
Murphy, A, Otto, B, Brearley, C, Carr, J and Hanke, D (2008) A role for inositol hexakisphosphate in the maintenance of basal resistance to plant pathogens. Plant Journal, 56 (4). pp. 638-652.
Tedman-Jones, JD, Lei, R, Jay, F, Fabro, G, Li, X, Reiter, WD, Brearley, C and Jones, JD (2008) Characterization of Arabidopsis mur3 mutations that result in constitutive activation of defence in petioles, but not leaves. Plant Journal, 56 (5). pp. 691-703.
Navarro, L, Bari, R, Archard, P, Lison, P, Nemri, A, Harberd, NP and Jones, JD (2008) DELLAs control plant immune responses by modulating the balance of jasmonic acid and salicylic acid signaling. Current Biology, 18. pp. 650-655.