All Publications

Beckers, M., Mohorianu, I., Stocks, M., Applegate, C., Dalmay, T., Moulton, V.

(2017)

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench,

in RNA

23

(6)

pp. 823-835

Full Text UEA Repository

(Article)

(Published)


Paicu, C., Mohorianu, I., Stocks, M., Xu, P., Coince, A., Billmeier, M., Dalmay, T., Moulton, V., Moxon, S.

(2017)

miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets,

in Bioinformatics

33

(16)

pp. 2446–2454

Full Text UEA Repository

(Article)

(Published)


Mohorianu, I., Stocks, M. B., Applegate, C. S., Folkes, L., Moulton, V.

(2017)

The UEA small RNA workbench: A suite of computational tools for small RNA analysis,

in MicroRNA Detection and Target Identification.

Springer

pp. 193-224

ISBN 978-1-4939-6864-0

Full Text UEA Repository

(Chapter)

(Published)


Mohorianu, I., Stocks, M. B., Wood, J., Dalmay, T., Moulton, V.

(2013)

CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data,

in RNA Biology

10

(7)

pp. 1221-1230

Full Text UEA Repository

(Article)

(Published)


Folkes, L., Moxon, S., Woolfenden, H., Stocks, M., Szittya, G., Dalmay, T., Moulton, V.

(2012)

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing,

in Nucleic Acids Research

40

(13)

pp. e103-e103

Full Text UEA Repository

(Article)

(Published)


Stocks, M., Moxon, S., Mapleson, D., Woolfenden, H., Mohorianu, I., Folkes, L., Schwach, F., Dalmay, T., Moulton, V.

(2012)

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets,

in Bioinformatics

28

(15)

pp. 2059-2061

Full Text UEA Repository

(Article)

(Published)


Stocks, M., Laycock, S., Hayward, S.

(2011)

Applying forces to elastic network models of large biomolecules using a haptic feedback device,

in Journal of Computer-Aided Molecular Design

25

(3)

pp. 203-211

Full Text UEA Repository

(Article)

(Published)


Laycock, S., Stocks, M., Hayward, S.

(2010)

Navigation and exploration of large data-sets using a haptic feedback device,

UEA Repository

(Paper)

(Published)


Stocks, M. B., Hayward, S., Laycock, S. D.

(2009)

Interacting with the biomolecular solvent accessible surface via a haptic feedback device,

in BMC Structural Biology

9

article no. 69

Full Text UEA Repository

(Article)

(Published)


Stocks, M., Laycock, S.

(2008)

A Haptic Rendering Algorithm for Molecular Interaction,

in Proceedings of the First Eurographics Conference on Visual Computing for Biomedicine.

pp. 37-44

UEA Repository

(Chapter)

(Published)