Career History

  • Principal Investigator and Director of the Ecology, Conservation, and Environment Center (ECEC), a joint venture of UEA with the Kunming Institute of Zoology (www.kiz.ac.cn/en) (2008-present)
  • Reader - University of East Anglia (2010-present)
  • Lecturer - University of East Anglia (2000-2010)
  • Postdoctoral research associate, Imperial College Centre for Population Biology (1999-2000)
  • Ph.D. - Harvard University (1997) NATO Postdoctoral Fellow, Imperial College (1998)
  • B.Sc. - Biology, Princeton University (1987)

Highlighted Publications

See All

Ji, Y., Ashton, L., Pedley, S. M., Edwards, D. P., Tang, Y., Nakamura, A., Kitching, R., Dolman, P., Woodcock, P., Edwards, F., Larsen, T., Hsu, W., Benedick, S., Hamer, K., Wilcove, D., Bruce, C., Wang, X., Levi, T., Lott, M., Emerson, B., Yu, D. W.

(2013)

Reliable, verifiable, and efficient monitoring of biodiversity via metabarcoding

in Ecology Letters

16.

pp. 1245–1257

UEA Repository

(Article)


Scheuring, I., Yu, D.

(2012)

How to assemble a beneficial microbiome in three easy steps

in Ecology Letters

15.

pp. 1300-1307

Full Text UEA Repository

(Article)


Yu, D., Ji, Y., Emerson, B., Wang, X., Ye, C., Yang, C., Ding, Z.

(2012)

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

in Methods in Ecology and Evolution

3.

pp. 613-623

Full Text UEA Repository

(Article)


Archetti, M., Scheuring, I., Hoffman, M., Frederickson, M., Pierce, N., Yu, D.

(2011)

Economic game theory for mutualism and cooperation

in Ecology Letters

14.

pp. 1300-1312

Full Text UEA Repository

(Article)


All Publications

See Highlights
<- Page 1 of 4 ->

Bayliss, J., Schaafsma, M., Balmford, A., Burgess, N. D., Green, J. M., Madoffe, S. S., Okayasu, S., Peh, K. S., Platts, P. J., Yu, D. W.

(2014)

The current and future value of nature-based tourism in the Eastern Arc Mountains of Tanzania

in Ecosystem Services

8.

pp. 75-83

Full Text UEA Repository

(Article)


Bohmann, K., Evans, A., Gilbert, M. T. P., Carvalho, G. R., Creer, S., Knapp, M., Yu, D. W., De Bruyn, M.

(2014)

Environmental DNA for wildlife biology and biodiversity monitoring

in Trends in Ecology & Evolution

29.

pp. 358-367

Full Text UEA Repository

(Article)


Yang, C., Wang, X., Miller, J. A., de Blécourt, M., Ji, Y., Yang, C., Harrison, R. D., Yu, D. W.

(2014)

Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator

in Ecological Indicators

46.

pp. 379-389

Full Text UEA Repository

(Article)


He, D., Wu, R., Feng, Y., Li, Y., Ding, C., Wang, W., Yu, D. W., Crispo, E. (ed.)

(2014)

China's transboundary waters: new paradigms for water and ecological security through applied ecology

in Journal Of Applied Ecology

51.

pp. 1159-1168

Full Text UEA Repository

(Article)


Seipke, R. F., Barke, J., Heavens, D., Yu, D. W., Hutchings, M. I.

(2013)

Analysis of the bacterial communities associated with two ant-plant symbioses

in MicrobiologyOpen

2.

pp. 276-283

Full Text UEA Repository

(Article)


Yu, D. W., Shepard, G. H., Ohl-Schacherer, J., Levi, T.

(2013)

Resolviendo el conflicto “parque-personas” en el Manu, con la estrategia "Ocupar la Amazonía"

In: Reporte Manu 2013: Pasión por la investigación en la Amazonía Peruana.

San Diego Zoo Global Peru y SERNANP

pp. 342–368

UEA Repository

(Chapter)


Yang, C., Ji, Y., Wang, X., Yang, C., Yu, D. W.

(2013)

Testing three pipelines for 18S rDNA-based metabarcoding of soil faunal diversity

in SCIENCE CHINA Life Sciences

56.

pp. 73-81

UEA Repository

(Article)


Wang, H., Ridley, J., Dunn, D., Wang, R., Cook, J., Yu, D.

(2013)

Biased oviposition and biased survival together help resolve a fig-wasp conflict

in Oikos

122.

pp. 533–540

UEA Repository

(Article)


Ramirez-Gonzalez, R., Yu, D., Bruce, C., Heavens, D., Caccamo, M., Emerson, B.

(2013)

PyroClean: Denoising pyrosequences from protein coding amplicons for the recovery of interspecific and intraspecific genetic variation

in PLoS ONE

8.

pp. e57615

UEA Repository

(Article)


Liu, S. L., Li, Y. Y., Liang, L. J., Su, X., Tang, M., Zhou, L. L., Zhou, C. R., Yang, Q., Ji, Y. Q., Yu, D. W., Zhou, X.

(2013)

SOAPBarcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons

in Methods in Ecology and Evolution

4.

pp. 1142–1150

UEA Repository

(Article)


Ji, Y., Ashton, L., Pedley, S. M., Edwards, D. P., Tang, Y., Nakamura, A., Kitching, R., Dolman, P., Woodcock, P., Edwards, F., Larsen, T., Hsu, W., Benedick, S., Hamer, K., Wilcove, D., Bruce, C., Wang, X., Levi, T., Lott, M., Emerson, B., Yu, D. W.

(2013)

Reliable, verifiable, and efficient monitoring of biodiversity via metabarcoding

in Ecology Letters

16.

pp. 1245–1257

UEA Repository

(Article)


Beckschäfer, P., Mundhenk, P., Kleinn, C., Ji, Y., Yu, D. W., Harrison, R. D.

(2013)

Enhanced structural complexity index: an improved index for describing forest structural complexity

in Open Journal of Forestry

03.

pp. 23-29

UEA Repository

(Article)


Kocher, S. D., Li, C., Yang, W., Tan, H., Yi, S. V., Yang, X., Hoekstra, H. E., Zhang, G., Pierce, N. E., Yu, D. W.

(2013)

The draft genome of a socially polymorphic halictid bee,

in Genome Biology

14.

pp. R142

Full Text UEA Repository

(Article)


Scheuring, I., Yu, D.

(2012)

How to assemble a beneficial microbiome in three easy steps

in Ecology Letters

15.

pp. 1300-1307

Full Text UEA Repository

(Article)


Shepard, G., Levi, T., Neves, E., Peres, C., Yu, D.

(2012)

Hunting in ancient and modern Amazonia: Rethinking sustainability.

in American Anthropologist

114.

pp. 652–667

Full Text UEA Repository

(Article)


Ye, C., Ma, Z., Cannon, C., Pop, M., Yu, D.

(2012)

Exploiting sparseness in de novo genome assembly

in BMC Bioinformatics

13.

pp. S1

Full Text UEA Repository

(Article)


Yu, D., Ji, Y., Emerson, B., Wang, X., Ye, C., Yang, C., Ding, Z.

(2012)

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

in Methods in Ecology and Evolution

3.

pp. 613-623

Full Text UEA Repository

(Article)


Seipke, R., Barke, J., Ruiz-Gonzalez, M., Orivel, J., Yu, D., Hutchings, M.

(2012)

Fungus-growing

in Antonie van Leeuwenhoek

101.

pp. 443-447

Full Text UEA Repository

(Article)


Dunn, D., Jansen-González, S., Cook, J., Yu, D., Pereira, R.

(2011)

Measuring the discrepancy between fecundity and lifetime reproductive success in a pollinating fig wasp

in Entomologia Experimentalis et Applicata

140.

pp. 218-225

Full Text UEA Repository

(Article)


Archetti, M., Úbeda, F., Fudenberg, D., Green, J., Pierce, N., Yu, D.

(2011)

Let the Right One In: A Microeconomic Approach to Partner Choice in Mutualisms

in The American Naturalist

177.

pp. 75-85

Full Text UEA Repository

(Article)


<- Page 1 of 4 ->

Key Research Interests

We study cooperation in two of its manifestations:

      Conservation (cooperation between humans and nature) and

      Mutualisms (cooperation between species).

See my personal webpage for more detail:  www.douglasyu.org/research/

Current Research Projects 

My research group concentrates on developing rapid, molecular protocols for measuring biodiversity, which we call "Biodiversity Soup". Without mechanisms to monitor the state of nature in ways that are cheap, repeatable, and verifiable, there is no way to set up incentives to preserve biodiversity.

Key papers are:

Yu, D. W., Ji, Y. Q., Emerson, B. C., Wang, X. Y., Ye, C. X., Yang, C. Y. & Ding, Z. L. (2012) Biodiversity Soup: Metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Methods in Ecology and Evolution, 3, 613–623.

Ji, Y. Q., Ashton, L., Pedley, S. M., Edwards, D. P., Tang, Y., Nakamura, A., Kitching, R. L., Dolman, P., Woodcock, P., Edwards, F. A., Larsen, T. H., Hsu, W. W., Benedick, S., Hamer, K. C., Wilcove, D. S., Bruce, C., Wang, X. Y., Levi, T., Lott, M., Emerson, B. C. & Yu, D. W. (2013) Reliable, verifiable, and efficient monitoring of biodiversity via metabarcoding. Ecology Letters, 16, 1245–1257.
 

Other research projects include:

Resolving people-park conflicts, using the relationship between Matsigenka Amerindians and Manu National Park, Peru as a model system.

Yu, D. W., Shepard, G. H., Ohl-Schacherer, J. & Levi, T. (2013) Resolviendo el conflicto “parque-personas” en el Manu, con la estrategia "Ocupar la Amazonía". Reporte Manu 2013: Pasión por la investigación en la Amazonía Peruana (eds. J. Groenendijk, A. Tovar & W. Wust), pp. 342–368. San Diego Zoo Global Peru y SERNANP, Lima, Peru.

An English-language version ("Resolving the people-park conflict in Manu with the Occupy Amazon strategy") is available on the Academia.edu and ResearchGate websites listed above.


Microbiome evolution (especially ones dominated by Actinobacteria), using game theory as a guide.

Scheuring, I. & Yu, D. W. (2012) How to assemble a beneficial microbiome in three easy steps. Ecology Letters, 15, 1300-1307.

Archetti, M., Scheuring, I., Hoffman, M., Frederickson, M. E., Pierce, N. E. & Yu, D. W. (2011) Economic game theory for mutualism and cooperation. Ecology Letters, 14, 1300-1312.

 

PhD Positions 

Please email me to discuss PhD opportunities and projects within the School of Biological Sciences.

Postdocs & Fellows 

I very much welcome postdoctoral associates who wish to conduct fieldwork in east Asia. I can provide laboratory facilities, logistical help, and introductions to appropriate Chinese collaborators. I am also happy to sponsor fellowship applications to funders outside China that involve the same.

Teaching Interests

I teach on

Introduction to Evolution, Ecology and Behaviour (BIO-4002B)

Evolutionary Biology (BIO-2B10)

Evolutionary Biology and Conservation Genetics (BIO-3C24)

Multivariate Statistics (ENV-MA72)

Professional Activities

Principal Investigator and Director of the Ecology, Conservation and Environment Center at the Kunming Institute of Zoology (2008-present)

Associate Editor, Methods in Ecology and Evolution (2013-present)

External examiner for MSc in Conservation Science, Imperial College at Silwood Park (2012-2015)

 

Administrative Posts

Module Organiser of Evolutionary Biology and Conservation Genetics (BIO-3C24)