Article

Folkes, L, Moxon, S, Woolfenden, HC, Stocks, MB, Szittya, G, Dalmay, T and Moulton, V (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Research, 40 (13). e103-e103. ISSN 0305-1048

Stocks, MB, Moxon, S, Mapleson, D, Woolfenden, HC, Mohorianu, I, Folkes, L, Schwach, F, Dalmay, T and Moulton, V (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics, 28 (15). pp. 2059-2061. ISSN 1367-4803

Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S, Szittya, G, Sorefan, K, Moulton, V and Dalmay, T (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. The Plant Journal, 67 (2). pp. 232-246. ISSN 09607412

Surridge, AK, Lopez-Gomollon, S, Moxon, S, Maroja, LS, Rathjen, T, Nadeau, NJ, Dalmay, T and Jiggins, CD (2011) Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics, 12 (1). p. 62. ISSN 1471-2164

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. Advances in Experimental Medicine and Biology, 722. pp. 239-254. ISSN 0065-2598

Nicolas, F. E., Moxon, Simon, de Haro, J. P., Calo, S., Grigoriev, I. V., Torres-Martinez, S., Moulton, Vincent, Ruiz-Vazquez, R. M. and Dalmay, Tamas (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Research, 38 (16). pp. 5535-5541. ISSN 0305-1048

Pantaleo, V, Saldarelli, P, Miozzi, L, Giampetruzzi, A, Gisel, A, Moxon, S, Dalmay, T, Bisztray, G and Burgyan, J (2010) Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology, 408 (1). pp. 49-56. ISSN 00426822

Pantaleo, V, Szittya, G, Moxon, S, Miozzi, L, Moulton, V, Dalmay, T and Burgyan, J (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. The Plant Journal, 62 (6). pp. 960-976.

Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent, Burgyan, Jozsef and Dalmay, Tamas (2010) Structural and Functional Analysis of Viral siRNAs. PLoS Pathogens, 6 (4). e1000838. ISSN 1553-7374

Szittya, G, Moxon, S, Santos, DM, Jing, R, Fevereiro, MP, Moulton, V and Dalmay, T (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9 (1). p. 593.

Moxon, S, Jing, R, Szittya, G, Schwach, F, Rusholme Pilcher, RL, Moulton, V and Dalmay, T (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Moxon, Simon, Moulton, Vincent and Kim, Jan T. (2008) A scoring matrix approach to detecting miRNA target sites. Algorithms in Molecular Biology, 3 (3).

Moxon, Simon, Schwach, Frank, Dalmay, Tamas, MacLean, Dan, Studholme, David J. and Moulton, Vincent (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Rusholme Pilcher, Rachel, Moxon, Simon, Pakseresht, Nima, Moulton, Vincent, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas (2007) Identification of novel short RNAs in tomato (Solanum lycopersicum). Planta, 226 (3). pp. 709-717. ISSN 0032-0935

Book Section

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2010) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: Non-coding RNA networks. Landes Bioscience. ISBN 978-1-4614-0331-9

Monograph

Bagnall, A, Moxon, S and Studholme, D (2007) Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. Technical Report. University of East Anglia.

Conference or Workshop Item

Bagnall, A, Moxon, S and Studholme, D (2008) Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. In: Proceedings of BIOCOMP 2008.