Article

Appia‑Ayme, C, Hall, A, Patrick, E, Rajadurai, S, Clarke, TA and Rowley, G (2012) ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR. Biochemical Journal, 442 (1). pp. 85-93. ISSN 0264-6021

Breuer, M, Zarzycki, P, Shi, L, Clarke, T, Edwards, MJ, Butt, J, Richardson, DJ, Fredrickson, JK, Zachara, JM, Blumberger, J and Rosso, KM (2012) Molecular Structure and Free Energy Landscape for Electron Transport in the Decahaem Cytochrome MtrF. Biochemical Society Transactions, 40 (6). pp. 1198-1203. ISSN 0300-5127

Breuer, M, Zarzycki, P, Shi, L, Clarke, T, Edwards, MJ, Butt, J, Richardson, DJ, Fredrickson, JK, Zachara, JM, Blumberger, J and Rosso, KM (2012) Molecular Structure and Free Energy Landscape for Electron Transport in the Decahaem Cytochrome MtrF. Biochemical Society Transactions, 40 (6). pp. 1198-1203. ISSN 0300-5127

Breuer, M, Zarzycki, P, Shi, L, Clarke, TA, Edwards, MJ, Butt, JN, Richardson, DJ, Fredrickson, JK, Zachara, JM, Blumberger, J and Rosso, KM (2012) Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF. Biochemical Society Transactions, 40 (6). pp. 1198-1203. ISSN 0300-5127

Edwards, MJ, Hall, A, Shi, L, Fredrickson, JK, Zachara, JM, Butt, JN, Richardson, DJ and Clarke, TA (2012) The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates. Structure, 20 (7). pp. 1275-1284. ISSN 09692126

Felgate, H, Giannopoulos, G, Sullivan, MJ, Gates, AJ, Clarke, T, Baggs, E, Rowley, G and Richardson, DJ (2012) The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways. Environmental Microbiology, 14 (7). pp. 1788-1800. ISSN 14622912

Richardson, DJ, Butt, JN, Fredrickson, JK, Zachara, JM, Shi, L, Edwards, M, White, G, Baiden, N, Gates, AJ, Marritt, SJ and Clarke, TA (2012) The ‘porin-cytochrome’ model for microbe-to-mineral electron transfer. Molecular Microbiology, 85 (2). pp. 201-212. ISSN 0950382X

Richardson, DJ, Edwards, MJ, White, GF, Baiden, N, Hartshorne, RS, Fredrickson, J, Shi, L, Zachara, J, Gates, AJ, Butt, JN and Clarke, TA (2012) Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration. Biochemical Society Transactions, 40 (3). pp. 493-500. ISSN 0300-5127

Shi, L, Rosso, KM, Clarke, T, Richardson, DJ, Zachara, JM and Fredrickson, JK (2012) Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1. Frontiers in Microbiology, 3. ISSN 1664-302X

White, GF, Shi, Z, Shi, L, Dohnalkova, AC, Fredrickson, JK, Zachara, JM, Butt, JN, Richardson, DJ and Clarke, T (2012) Development of a Proteoliposome Model to Probe Transmembrane Electron-Transfer Reactions. Biochemical Society Transactions, 40 (6). pp. 1257-1260. ISSN 0300-5127

White, GF, Shi, Z, Shi, L, Dohnalkova, AC, Fredrickson, JK, Zachara, JM, Butt, JN, Richardson, DJ and Clarke, TA (2012) Development of a proteoliposome model to probe transmembrane electron-transfer reactions. Biochemical Society Transactions, 40 (6). pp. 1257-1260. ISSN 0300-5127

Boutemy, LS, King, SRF, Win, Joe, Hughes, RK, Clarke, TA, Blumenschein, TMA, Kamoun, S and Banfield, MJ (2011) Structures of Phytophthora RXLR Effector Proteins: a CONSERVED BUT ADAPTABLE FOLD UNDERPINS FUNCTIONAL DIVERSITY. Journal of Biological Chemistry, 286 (41). pp. 35834-35842. ISSN 0021-9258

Clarke, TA, Edwards, MJ, Gates, AJ, Hall, A, White, GF, Bradley, J, Reardon, CL, Shi, L, Beliaev, AS, Marshall, MJ, Wang, Z, Watmough, NJ, Fredrickson, JK, Zachara, JM, Butt, JN and Richardson, DJ (2011) Structure of a bacterial cell surface decaheme electron conduit. Proceedings of the National Academy of Sciences, 108 (23). pp. 9384-9389. ISSN 0027-8424

Clarke, Tom, Fairhurst, Shirley, Lowe, David J., Watmough, Nick and Eady, Robert R. (2011) Electron transfer and half-reactivity in nitrogenase. Biochemical Society Transactions, 39 (1). pp. 201-206. ISSN 0300-5127

Little, R, Salinas, P, Slavny, P, Clarke, TA and Dixon, R (2011) Substitutions in the redox-sensing PAS domain of the NifL regulatory protein define an inter-subunit pathway for redox signal transmission. Molecular Microbiology, 82 (1). pp. 222-235. ISSN 0950382X

Lockwood, C, Butt, JN, Clarke, TA and Richardson, DJ (2011) Molecular interactions between multihaem cytochromes: probing the protein–protein interactions between pentahaem cytochromes of a nitrite reductase complex. Biochemical Society Transactions, 39 (1). pp. 263-268. ISSN 0300-5127

Lockwood, CWJ, Clarke, TA, Butt, JN, Hemmings, AM and Richardson, DJ (2011) Characterization of the active site and calcium binding in cytochromecnitrite reductases. Biochemical Society Transactions, 39 (6). pp. 1871-1875. ISSN 0300-5127

Kemp, GL, Clarke, TA, Marritt, SJ, Lockwood, C, Poock, SR, Hemmings, AM, Richardson, DJ, Cheesman, MR and Butt, JN (2010) Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA fromEscherichia coli. Biochemical Journal, 431 (1). pp. 73-80. ISSN 0264-6021

Hartshorne, RS, Reardon, CL, Ross, D, Nuester, J, Clarke, TA, Gates, AJ, Mills, PC, Fredrickson, JK, Zachara, JM, Shi, L, Beliaev, AS, Marshall, MJ, Tien, M, Brantley, S, Butt, JN and Richardson, DJ (2009) Characterization of an electron conduit between bacteria and the extracellular environment. Proceedings of the National Academy of Sciences, 106 (52). pp. 22169-22174. ISSN 0027-8424

Edwards, MJ, Flatman, RH, Mitchenall, LA, Stevenson, CEM, Le, TBK, Clarke, TA, McKay, AR, Fiedler, H-P, Buttner, MJ, Lawson, DM and Maxwell, A (2009) A Crystal Structure of the Bifunctional Antibiotic Simocyclinone D8, Bound to DNA Gyrase. Science, 326 (5958). pp. 1415-1418. ISSN 0036-8075

Clarke, TA, Kemp, GL, Van Wonderen, JH, Doyle, RM, Cole , JA, Tovell, N, Cheesman, MR, Butt, JN, Richardson, DJ and Hemmings, AM (2008) Role of a conserved gluatmine residue in tuning the catalytic activity of Escherichia coli cytochrome c nitrite reductase. Biochemistry, 47 (12). pp. 3789-3799.

Clarke, TA, Holley, T, Hartshorne, RS, Fredrickson, JK, Zachara, JM, Shi, L and Richardson, DJ (2008) The role of multihaem cytochromes in the respiration of nitrite in Eschericia coli and fe(III) in Shewanella oneidensis. Biochemical Society Transactions, 36 (5). pp. 1005-1010.

Clarke, TA, Mills, PC, Poock, SR, Butt, JN, Cheesman, MR, Cole, JA, Hinton, JC, Hemmings, AM, Kemp, G, Soderberg, CA, Spiro, S, Van Wonderen, J and Richardson, DJ (2008) Escherichia coli cytochrome c nitrite reductase NrfA. Methods in Enzymology, 437. pp. 63-77.

Tucker, NP, Hicks, M, Clarke, T, Avondo, J, Chandra, G, Le Brun, N, Dixon, R and Hutchings, M (2008) The transcriptional repressor protein NsrR senses nitric oxide directly via a [2Fe-2S] cluster. PloS one, 3 (11). e3623. ISSN 1932-6203

Hartshorne, RS, Jepson, BN, Clarke, TA, Field, SJ, Fredrickson, J, Zachara, J, Shi, L, Butt, JN and Richardson, DJ (2007) Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors. JBIC Journal of Biological Inorganic Chemistry, 12 (7). pp. 1083-1094. ISSN 0949-8257

Clarke, TA, Cole, JA, Richardson, DJ and Hemmings, AM (2007) The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA. Biochemical Journal, 406 (1). pp. 19-30. ISSN 02646021

Hartshorne, RS, Kern, M, Meyer, B, Clarke, TA, Karas, M, Richardson, DJ and Simon, J (2007) A dedicated haem lyase is required for the maturation of a novel bacterial cytochrome c with unconventional covalent haem binding. Molecular Microbiology, 64 (4). pp. 1049-1060. ISSN 0950-382X

Jepson, BJN, Mohan, S, Clarke, TA, Gates, AJ, Cole, JA, Butler, CS, Butt, JN, Hemmings, AM and Richardson, DJ (2007) Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli. Journal of Biological Chemistry, 282. pp. 6425-6437.

Hemmings, AM, Clarke, TA, Burlat, B, Butt, JN, Cole, JA and Richardson, DJ (2006) Comparison of the structural and kinetic properties of the cytochrome c nitrite reductases from Escherichia coli, Wolinella succinogenes, Sulfurospirillum deleyianum and Desulfovibrio desulfuricans. Biochemical Society Transactions, 34 (1). p. 143. ISSN 03005127

Hatzixanthis, K, Clarke, TA, Oubrie, A, Richardson, DJ, Turner, RJ and Sargent, F (2005) Signal peptide-chaperone interactions on the twin-arginine protein transport pathway. Proceedings of the National Academy of Sciences USA, 102. pp. 8460-8465. ISSN 0027-8424

Burlat, B, Gwyer, JD, Poock, S, Clarke, TA, Cole, JA, Hemmings, AM, Cheesman, MR, Butt, JN and Richardson, DJ (2005) Cytochrome c nitrite reductase: from structural to physicochemical analysis. Biochemical Society Transactions, 33 (1). pp. 137-140. ISSN 03005127

Clarke, TA, Dennison, V, Seward, HE, Burlat, B, Cole, JA, Hemmings, AM and Richardson, DJ (2004) Purification and spectropotentiometric characterization of Escherichia coli NrfB, a decaheme homodimer that transfers electrons to the decaheme periplasmic nitrite reductase complex. Journal of Biological Chemistry, 279 (40). pp. 41333-41339. ISSN 0021-9258

Clarke, TA, Im, S-C, Bidwai, A and Waskell, L (2004) The Role of the Length and Sequence of the Linker Domain of Cytochrome b5 in Stimulating Cytochrome P450 2B4 Catalysis. Journal of Biological Chemistry, 279 (35). pp. 36809-36818. ISSN 0021-9258

Clarke, TA and Waskell, LA (2003) The metabolism of clopidogrel is catalyzed by human cytochrome P450 3A and is inhibited by atorvastatin. Drug Metabolism and Disposition, 31 (1). pp. 53-59.