Article

Grimm, D, Dalmay, T and van Rij, RP (2012) Everybody wins! Poland hosts thrilling competitions of viruses, RNAi and football teams. EMBO reports, 13 (10). pp. 874-876. ISSN 1469-221X

Lopez-Gomollon, S, Mohorianu, I, Szittya, G, Moulton, V and Dalmay, T (2012) Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions. Planta. ISSN 0032-0935 (In Press)

Dasmahapatra, KK, Walters, JR, Briscoe, AD, Davey, JW, Whibley, A, Nadeau, NJ, Zimin, Aleksey V., Hughes, Daniel S. T., Ferguson, Laura C., Martin, Simon H., Salazar, Camilo, Lewis, James J., Adler, Sebastian, Ahn, Seung-Joon, Baker, Dean A., Baxter, Simon W., Chamberlain, Nicola L., Chauhan, Ritika, Counterman, Brian A., Dalmay, T, Gilbert, Lawrence E., Gordon, Karl, Heckel, David G., Hines, Heather M., Hoff, Katharina J., Holland, Peter W. H., Jacquin-Joly, Emmanuelle, Jiggins, Francis M., Jones, Robert T., Kapan, Durrell D., Kersey, Paul, Lamas, Gerardo, Lawson, Daniel, Mapleson, Daniel, Maroja, Luana S., Martin, Arnaud, Moxon, Simon, Palmer, William J., Papa, Riccardo, Papanicolaou, Alexie, Pauchet, Yannick, Ray, David A., Rosser, Neil, Salzberg, Steven L., Supple, Megan A., Surridge, Alison, Tenger-Trolander, Ayse, Vogel, Heiko, Wilkinson, Paul A., Wilson, Derek, Yorke, James A., Yuan, Furong, Balmuth, Alexi L., Eland, Cathlene, Gharbi, Karim, Thomson, Marian, Gibbs, Richard A., Han, Yi, Jayaseelan, Joy C., Kovar, Christie, Mathew, Tittu, Muzny, Donna M., Ongeri, Fiona, Pu, Ling-Ling, Qu, Jiaxin, Thornton, Rebecca L., Worley, Kim C., Wu, Yuan-Qing, Linares, Mauricio, Blaxter, Mark L., ffrench-Constant, Richard H., Joron, Mathieu, Kronforst, Marcus R., Mullen, Sean P., Reed, Robert D., Scherer, Steven E., Richards, Stephen, Mallet, James, Owen McMillan, W. and Jiggins, Chris D. (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature, 487 (7405). pp. 94-98. ISSN 0028-0836

Folkes, L, Moxon, S, Woolfenden, HC, Stocks, MB, Szittya, G, Dalmay, T and Moulton, V (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Research, 40 (13). e103-e103. ISSN 0305-1048

Goljanek-Whysall, K, Pais, H, Rathjen, T, Sweetman, D, Dalmay, T and Munsterberg, A (2012) Regulation of multiple target genes by miR-1 and miR-206 is pivotal for C2C12 myoblast differentiation. Journal of Cell Science, 125 (15). pp. 3590-3600. ISSN 0021-9533

Matthewman, CA, Kawashima, CG, Húska, D, Csorba, T, Dalmay, T and Kopriva, S (2012) miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis. FEBS Letters, 586 (19). pp. 3242-3248. ISSN 00145793

Mohorianu, I, Lopez-Gomollon, S, Schwach, F, Dalmay, T and Moulton, V (2012) FiRePat-Finding Regulatory Patterns between sRNAs and Genes. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 2 (3). pp. 273-284. ISSN 19424787

Nicolas Molina, F, Hall, AE, Csorba, T, Turnbull, C and Dalmay, T (2012) Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Letters, 586 (8). pp. 1226-1230. ISSN 00145793

Sato, S, Tabata, S, Hirakawa, H, Asamizu, E, Shirasawa, K, Isobe, S, Kaneko, T, Nakamura, Y, Shibata, D, Aoki, K, Egholm, M, Knight, J, Bogden, R, Li, C, Shuang, Y, Xu, X, Pan, Shengkai, Cheng, Shifeng, Liu, X, Ren, Yuanyuan, Wang, Jun, Albiero, Alessandro, Dal Pero, Francesca, Todesco, Sara, Van Eck, Joyce, Buels, Robert M., Bombarely, Aureliano, Gosselin, Joseph R., Huang, Minyun, Leto, Jonathan A., Menda, Naama, Strickler, Susan, Mao, Linyong, Gao, Shan, Tecle, Isaak Y., York, Thomas, Zheng, Yi, Vrebalov, Julia T., Lee, JeMin, Zhong, Silin, Mueller, Lukas A., Stiekema, Willem J., Ribeca, Paolo, Alioto, Tyler, Yang, Wencai, Huang, Sanwen, Du, Yongchen, Zhang, Zhonghua, Gao, Jianchang, Guo, Yanmei, Wang, Xiaoxuan, Li, Ying, He, Jun, Li, Chuanyou, Cheng, Zhukuan, Zuo, Jianru, Ren, Jianfeng, Zhao, Jiuhai, Yan, Liuhua, Jiang, Hongling, Wang, Bao, Li, Hongshuang, Li, Zhenjun, Fu, Fuyou, Chen, Bingtang, Han, Bin, Feng, Qi, Fan, Danlin, Wang, Ying, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, Richard McCombie, W., Lippman, Zachary B., Chia, Jer-Ming, Jiang, Ke, Pasternak, Shiran, Gelley, Laura, Kramer, Melissa, Anderson, Lorinda K., Chang, Song-Bin, Royer, Suzanne M., Shearer, Lindsay A., Stack, Stephen M., Rose, Jocelyn K. C., Xu, Yimin, Eannetta, Nancy, Matas, Antonio J., McQuinn, Ryan, Tanksley, Steven D., Camara, Francisco, Guigó, Roderic, Rombauts, Stephane, Fawcett, Jeffrey, Van de Peer, Yves, Zamir, Dani, Liang, Chunbo, Spannagl, Manuel, Gundlach, Heidrun, Bruggmann, Remy, Mayer, Klaus, Jia, Zhiqi, Zhang, Junhong, Ye, Zhibiao, Bishop, Gerard J., Butcher, Sarah, Lopez-Cobollo, Rosa, Buchan, Daniel, Filippis, Ioannis, Abbott, James, Dixit, Rekha, Singh, Manju, Singh, Archana, Kumar Pal, Jitendra, Pandit, Awadhesh, Kumar Singh, Pradeep, Kumar Mahato, Ajay, Dogra, Vivek, Gaikwad, Kishor, Raj Sharma, Tilak, Mohapatra, Trilochan, Kumar Singh, Nagendra, Causse, Mathilde, Rothan, Christophe, Schiex, Thomas, Noirot, Céline, Bellec, Arnaud, Klopp, Christophe, Delalande, Corinne, Berges, Hélène, Mariette, Jérôme, Frasse, Pierre, Vautrin, Sonia, Zouine, Mohamed, Latché, Alain, Rousseau, Christine, Regad, Farid, Pech, Jean-Claude, Philippot, Murielle, Bouzayen, Mondher, Pericard, Pierre, Osorio, Sonia, Fernandez del Carmen, Asunción, Monforte, Antonio, Granell, Antonio, Fernandez-Muñoz, Rafael, Conte, Mariana, Lichtenstein, Gabriel, Carrari, Fernando, De Bellis, Gianluca, Fuligni, Fabio, Peano, Clelia, Grandillo, Silvana, Termolino, Pasquale, Pietrella, Marco, Fantini, Elio, Falcone, Giulia, Fiore, Alessia, Giuliano, Giovanni, Lopez, Loredana, Facella, Paolo, Perrotta, Gaetano, Daddiego, Loretta, Bryan, Glenn, Orozco, Modesto, Pastor, Xavier, Torrents, David, van Schriek, Marco G. M., Feron, Richard M.C., van Oeveren, Jan, de Heer, Peter, daPonte, Lorena, Jacobs-Oomen, Saskia, Cariaso, Mike, Prins, Marcel, van Eijk, Michiel J. T., Janssen, Antoine, van Haaren, Mark J. J., Jo, Sung-Hwan, Kim, Jungeun, Kwon, Suk-Yoon, Kim, Sangmi, Koo, Dal-Hoe, Lee, Sanghyeob, Hur, Cheol-Goo, Clouser, Christopher, Rico, Alain, Hallab, Asis, Gebhardt, Christiane, Klee, Kathrin, Jöcker, Anika, Warfsmann, Jens, Göbel, Ulrike, Kawamura, Shingo, Yano, Kentaro, Sherman, Jamie D., Fukuoka, Hiroyuki, Negoro, Satomi, Bhutty, Sarita, Chowdhury, Parul, Chattopadhyay, Debasis, Datema, Erwin, Smit, Sandra, Schijlen, Elio G. W. M., van de Belt, Jose, van Haarst, Jan C., Peters, Sander A., van Staveren, Marjo J., Henkens, Marleen H. C., Mooyman, Paul J. W., Hesselink, Thamara, van Ham, Roeland C. H. J., Jiang, Guoyong, Droege, Marcus, Choi, Doil, Kang, Byung-Cheol, Dong Kim, Byung, Park, Minkyu, Kim, Seungill, Yeom, Seon-In, Lee, Yong-Hwan, Choi, Yang-Do, Li, Guangcun, Gao, Jianwei, Liu, Yongsheng, Huang, Shengxiong, Fernandez-Pedrosa, Victoria, Collado, Carmen, Zuñiga, Sheila, Wang, Guoping, Cade, Rebecca, Dietrich, Robert A., Rogers, Jane, Knapp, Sandra, Fei, Zhangjun, White, Ruth A., Thannhauser, Theodore W., Giovannoni, James J., Angel Botella, Miguel, Gilbert, Louise, Gonzalez, Ramon, Luis Goicoechea, Jose, Yu, Yeisoo, Kudrna, David, Collura, Kristi, Wissotski, Marina, Wing, Rod, Schoof, Heiko, Meyers, Blake C., Bala Gurazada, Aishwarya, Green, Pamela J., Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh K., Dalmay, Tamas, Mohorianu, Irina, Walts, Brandon, Chamala, Srikar, Brad Barbazuk, W., Li, Jingping, Guo, Hui, Lee, Tae-Ho, Wang, Yupeng, Zhang, Dong, Paterson, Andrew H., Wang, Xiyin, Tang, Haibao, Barone, Amalia, Luisa Chiusano, Maria, Raffaella Ercolano, Maria, D’Agostino, Nunzio, Di Filippo, Miriam, Traini, Alessandra, Sanseverino, Walter, Frusciante, Luigi, Seymour, Graham B., Elharam, Mounir, Fu, Ying, Hua, Axin, Kenton, Steven, Lewis, Jennifer, Lin, Shaoping, Najar, Fares, Lai, Hongshing, Qin, Baifang, Qu, Chunmei, Shi, Ruihua, White, Douglas, White, James, Xing, Yanbo, Yang, Keqin, Yi, Jing, Yao, Ziyun, Zhou, Liping, Roe, Bruce A., Vezzi, Alessandro, D’Angelo, Michela, Zimbello, Rosanna, Schiavon, Riccardo, Caniato, Elisa, Rigobello, Chiara, Campagna, Davide, Vitulo, Nicola, Valle, Giorgio, Nelson, David R., De Paoli, Emanuele, Szinay, Dora, de Jong, Hans H., Bai, Yuling, Visser, Richard G. F., Klein Lankhorst, René M., Beasley, Helen, McLaren, Karen, Nicholson, Christine, Riddle, Claire, Gianese, Giulio, Sato, Shusei, Tabata, Satoshi, Mueller, Lukas A., Huang, Sanwen, Du, Yongchen, Li, Chuanyou, Cheng, Zhukuan, Zuo, Jianru, Han, Bin, Wang, Ying, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, Richard McCombie, W., Lippman, Zachary B., Stack, Stephen M., Tanksley, Steven D., Van de Peer, Yves, Mayer, Klaus, Bishop, Gerard J., Butcher, Sarah, Kumar Singh, Nagendra, Schiex, Thomas, Bouzayen, Mondher, Granell, Antonio, Carrari, Fernando, De Bellis, Gianluca, Giuliano, Giovanni, Bryan, Glenn, van Eijk, Michiel J. T., Fukuoka, Hiroyuki, Chattopadhyay, Debasis, van Ham, Roeland C. H. J., Choi, Doil, Rogers, Jane, Fei, Zhangjun, Giovannoni, James J., Wing, Rod, Schoof, Heiko, Meyers, Blake C., Khurana, Jitendra P., Tyagi, Akhilesh K., Dalmay, T, Paterson, Andrew H., Wang, Xiyin, Frusciante, Luigi, Seymour, Graham B., Roe, Bruce A., Valle, Giorgio, de Jong, Hans H. and Klein Lankhorst, René M. (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485 (7400). pp. 635-641. ISSN 0028-0836

Song, JB, Huang, SQ, Dalmay, T and Yang, ZM (2012) Regulation of Leaf Morphology by MicroRNA394 and its Target LEAF CURLING RESPONSIVENESS. Plant and Cell Physiology, 53 (7). pp. 1283-1294. ISSN 0032-0781

Sorefan, K, Pais, H, Hall, AE, Kozomara, A, Griffiths-Jones, S, Moulton, V and Dalmay, T (2012) Reducing sequencing bias of small RNAs. Silence, 3 (1). p. 4.

Stocks, MB, Moxon, S, Mapleson, D, Woolfenden, HC, Mohorianu, I, Folkes, L, Schwach, F, Dalmay, T and Moulton, V (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics, 28 (15). pp. 2059-2061. ISSN 1367-4803

Swingler, TE, Wheeler, G, Carmont, V, Elliott, HR, Barter, MJ, Abu-Elmagd, M, Donell, ST, Boot-Handford, RP, Hajihosseini, MK, Munsterberg, A, Dalmay, T, Young, DA and Clark, IM (2012) The expression and function of microRNAs in chondrogenesis and osteoarthritis. Arthritis & Rheumatism, 64 (6). pp. 1909-1919. ISSN 00043591

Goljanek-Whysall, K, Sweetman, D, Abu-Elmagd, M, Chapnik, E, Dalmay, T, Hornstein, E and Munsterberg, A (2011) MicroRNA regulation of the paired-box transcription factor Pax3 confers robustness to developmental timing of myogenesis. Proceedings of the National Academy of Sciences, 108 (29). pp. 11936-11941. ISSN 0027-8424

Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S, Szittya, G, Sorefan, K, Moulton, V and Dalmay, T (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. The Plant Journal, 67 (2). pp. 232-246. ISSN 09607412

Kawashima, CG, Matthewman, CA, Huang, S, Lee, B-R, Yoshimoto, N, Koprivova, A, Rubio-Somoza, I, Todesco, M, Rathjen, T, Saito, K, Takahashi, H, Dalmay, T and Kopriva, S (2011) Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis. The Plant Journal, 66 (5). pp. 863-876. ISSN 09607412

Surridge, AK, Lopez-Gomollon, S, Moxon, S, Maroja, LS, Rathjen, T, Nadeau, NJ, Dalmay, T and Jiggins, CD (2011) Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics, 12 (1). p. 62. ISSN 1471-2164

Nicolas , Francisco, Lopez-Gomollon, Sara, Lopez-Martinez, Alfonso and Dalmay, Tamas (2011) Silencing Human Cancer: Identification and Uses of MicroRNAs. Recent Patents on Anti-Cancer Drug Discovery, 6 (1). pp. 94-105. ISSN 15748928

Nicolas Molina, F, Pais, H, Schwah, F, Lindow, M, Kauppinen, S, Moulton, V and Dalmay, T (2011) mRNA expression profiling reveals conserved and non-conserved miR-140. RNA Biology, 8 (4). pp. 607-615. ISSN 1547-6286

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. Advances in Experimental Medicine and Biology, 722. pp. 239-254. ISSN 0065-2598

Lopez-Gomollon, S and Dalmay, T (2010) Recent Patents in RNA Silencing in Plants: Constructs, Methods and Applications in Plant Biotechnology. Recent Patents on DNA & Gene Sequences, 4 (3). pp. 155-166. ISSN 18722156

Pais, H, Nicolas, FE, Soond, S, Swingler, T, Clark, I, Chantry, A, Moulton, V and Dalmay, T (2010) Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level. RNA, 16 (3). pp. 489-494. ISSN 1355-8382

Dalmay, Tamas (2010) Short RNAs in Tomato. Journal of Integrative Plant Biology, 52 (4). pp. 388-392. ISSN 16729072

Ho, Thien, Wang, Liang, Huang, Linfeng, Li, Zhigang, Pallett, Denise W., Dalmay, Tamas, Ohshima, Kazusato, Walsh, John A. and Wang, Hui (2010) Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Protein & Cell, 1 (9). pp. 847-858. ISSN 1674-800X

Nicolas, F. E., Moxon, Simon, de Haro, J. P., Calo, S., Grigoriev, I. V., Torres-Martinez, S., Moulton, Vincent, Ruiz-Vazquez, R. M. and Dalmay, Tamas (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Research, 38 (16). pp. 5535-5541. ISSN 0305-1048

Pantaleo, V, Saldarelli, P, Miozzi, L, Giampetruzzi, A, Gisel, A, Moxon, S, Dalmay, T, Bisztray, G and Burgyan, J (2010) Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology, 408 (1). pp. 49-56. ISSN 00426822

Pantaleo, V, Szittya, G, Moxon, S, Miozzi, L, Moulton, V, Dalmay, T and Burgyan, J (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. The Plant Journal, 62 (6). pp. 960-976.

Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent, Burgyan, Jozsef and Dalmay, Tamas (2010) Structural and Functional Analysis of Viral siRNAs. PLoS Pathogens, 6 (4). e1000838. ISSN 1553-7374

Trindade, I, Capitaeo, C, Dalmay, T, Fevereiro, MP and Santos, DM (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta, 231 (3). pp. 705-716.

Kawashima, CG, Yoshimoto, N, Maruyama-Nakashita, A, Tsuchiya, Y, Saito, K, Takahashi, H and Dalmay, T (2009) Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant Journal, 57 (2). pp. 313-321.

Johnston, I.A., Lee, H.T., Macqueen, D.J., Paranthaman, K., Kawashima, C., Anwar, A., Kinghorn, J.R. and Dalmay, T. (2009) Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genomewide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes. The Journal of Experimental Biology, 212. pp. 1781-1793.

Lewis, M., Quint, E., Glazier, A.M., Fuchs, H., De Angelis, M.H., Langford, C., Van Dongen, S., Abreu-Goodger, C., Piipari, M., Redshaw, N., Dalmay, T., Moreno Pelayo, M.A., Enright, A. and Steel, K.P. (2009) An ENU-induced mutation of a miRNA associated with progressive hearing loss. Nature Genetics, 41(5). pp. 614-618.

Liu, Ding Xiang, Navarro, Beatriz, Pantaleo, Vitantonio, Gisel, Andreas, Moxon, Simon, Dalmay, Tamas, Bisztray, György, Di Serio, Francesco and Burgyán, József (2009) Deep Sequencing of Viroid-Derived Small RNAs from Grapevine Provides New Insights on the Role of RNA Silencing in Plant-Viroid Interaction. PLoS ONE, 4 (11). e7686. ISSN 1932-6203

Mencia, A., Modamio-Hoybjor, S., Redshaw, N., Morin, M., Mayo-Merino, F., Olavarrieta, L., Aguirre, L.A., del Castillo, I., Steel, K.P., Dalmay, T., Moreno, F. and Moreno-Pelayo, M.A. (2009) Mutations in the seed region of the human miR-96 are responsible for non-syndromic progressive hearing loss. Nature Genetics, 41(5). pp. 609-613.

Nicolas, Francisco E., Lopez-Gomollon, Sara, Lopez-Martinez, Alfonso F. and Dalmay, Tamas (2009) RNA Silencing: Recent Developments on miRNAs. Recent Patents on DNA & Gene Sequences, 3 (2). pp. 77-87. ISSN 18722156

Rathjen, Tina, Pais, Helio, Sweetman, Dylan, Moulton, Vincent, Munsterberg, Andrea and Dalmay, Tamas (2009) High throughput sequencing of microRNAs in chicken somites. FEBS Letters, 583 (9). pp. 1422-1426.

Redshaw, N., Wheeler, G., Hajihosseini, M.K. and Dalmay, T. (2009) microRNA-449 is a putative regulator of choroid plexus development and function. Brain Research, 1250. pp. 20-26.

Schwach, F., Moxon, S., Moulton, Vincent and Dalmay, Tamas (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Briefings in Functional Genomics and Proteomics, 8 (6). pp. 472-481. ISSN 1473-9550

Szittya, G, Moxon, S, Santos, DM, Jing, R, Fevereiro, MP, Moulton, V and Dalmay, T (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9 (1). p. 593.

Moxon, S, Jing, R, Szittya, G, Schwach, F, Rusholme Pilcher, RL, Moulton, V and Dalmay, T (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Nicolas Molina, FE, Pais, H, Schwach, F, Lindow, M, Kauppinen, S, Moulton, V and Dalmay, T (2008) Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140. RNA, 14. pp. 2513-2520.

Dalmay, T (2008) MicroRNAs and cancer. Journal of Internal Medicine, 263 (4). pp. 366-375.

Ho, T, Rusholme, R, Edwards, M-L, Cooper, I, Dalmay, T and Wang, H (2008) Evidence for GC preference by monocot Dicer-like proteins. Biochemical and Biophysical Research Communications, 368 (2). pp. 433-437.

Dalmay, T (2008) Identification of genes targeted by microRNAs. Biochemical Society Transactions, 36. pp. 1194-1196.

Moxon, Simon, Schwach, Frank, Dalmay, Tamas, MacLean, Dan, Studholme, David J. and Moulton, Vincent (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Sweetman, D, Goljanek, K, Rathjen, T, Oustanina, S, Braun, T, Dalmay, T and Munsterberg, A (2008) Specific requirements of MRFs for the expression of muscle specific microRNAs, miR-1, miR-206 and miR-133. Developmental Biology, 321 (2). pp. 491-499.

Csorba, T., Bovi, A., Dalmay, T. and Burgyan, J. (2007) The p122 subunit of Tobacco mosaic virus replicase is a potent silencing suppressor and compromises both siRNA and miRNA mediated pathways. Journal of Virology, 81 (21). pp. 11768-11780. ISSN 0022-538X

Herbandez-Pinzon, I., Yelina, N.E., Scwach, F., Studholme, D., Baulcombe, D. and Dalmay, T. (2007) SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant Journal, 50 (1). pp. 140-148. ISSN 0960-7412

Ho, T., Wang, H., Pallett, D. and Dalmay, T. (2007) Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins. FEBS Lett, 581(17). pp. 3267-3272.

Phillips, J., Dalmay, T. and Bartels, D. (2007) The role of small RNAs in abiotic stress. FEBS Letters, 581(19). pp. 3592-3597.

Rusholme Pilcher, Rachel, Moxon, Simon, Pakseresht, Nima, Moulton, Vincent, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas (2007) Identification of novel short RNAs in tomato (Solanum lycopersicum). Planta, 226 (3). pp. 709-717. ISSN 0032-0935

Wheeler, G., Valoczi, E., Havelda, Z. and Dalmay, T. (2007) In situ detection of animal and plant miRNAs. DNA and Cell Biology, 26. pp. 251-255.

Ho, T, Pallett, D, Rusholme, R, Dalmay, T and Wang, H (2006) A simplified method for cloning of short interfering RNAs from Brassica juncea infected with Turnip mosaic potyvirus and Turnip crinkle carmovirus. Journal of Virological Methods, 136 (1-2). pp. 217-223.

Dalmay, T (2006) Short RNAs in environmental adaptation. Proceedings of the Royal Society of London B, 273 (1594). pp. 1579-1585.

Dalmay, T. and Edwards, D.R. (2006) MicroRNAs and the Hallmarks of Cancer. Oncogene, 25. pp. 6170-6175.

Rathjen, T., Hunton, C., McConkey, G. and Dalmay, T. (2006) Analysis of short RNAs in the malaria parasite and its red blood cell host. FEBS Letters, 580. pp. 5185-5188.

Sweetman, D., Rathjen, T., Jefferson, M., Wheeler, G., Smith, T.G., Wheeler, G.N., Munsterberg, A. and Dalmay, T. (2006) FGF-4 signalling is involved in mir-206 expression in developing somites of chicken embryos. Developmental Dynamics, 235. pp. 2185-2191.

Tuddenham, Lee, Wheeler, G., Ntouniafousara, S., Waters, J., Hajihosseini, Mohammad, Clark, Ian and Dalmay, Tamas (2006) The cartilage specific microRNA-140 targets histone deacetylase 4 in mouse cells. FEBS Letters, 580 (17). pp. 4214-4217. ISSN 00145793

Wheeler, G., Ntonuia-Fousara, S., Granda, B., Rathjen, T. and Dalmay, T. (2006) Identification of new central nervous system specific mouse microRNAs. FEBS Letters, 580. pp. 2195-2200.

Herr, A.J., Jensen, M.B., Dalmay, T. and Baulcombe, D.C. (2005) RNA polymerase IV directs silencing of endogenous DNA. Science, 308 (5718). pp. 118-120. ISSN 0036-8075

Szittya, G, Silhavy, D, Dalmay, T and Burgyan, J (2002) Size-dependent cell-to-cell movement of defective interfering RNAs of Cymbidium ringspot virus. Journal of General Virology, 83 (6). pp. 1505-1510.

Dalmay, T., Horsefield, R., Braunstein, T.H. and Baulcombe, D. (2001) SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO Journal, 20 (8). pp. 2069-2077. ISSN 0261-4189

Book Section

Dalmay, T (2010) Detection of small non-coding RNAs. In: Plant Developmental Biology. Molecular Biology, 655 . Humana Press. ISBN 1064-3745

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2010) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: Non-coding RNA networks. Landes Bioscience. ISBN 978-1-4614-0331-9

Dalmay, T (2008) MicroRNAs. In: Encyclopedia of Cancer. Springer (Humana Press). ISBN 9783540368472

Ho, TX, Rusholme, R, Dalmay, T and Wang, H (2008) Cloning of short interfering RNAs from virus-infected plants. In: Plant Virology Protocols II. Springer Verlag, New York, pp. 229-241. ISBN 9781588298270

Szittya, G, Dalmay, T and Burgyan, J (2008) Plant Antiviral Defense: Gene Silencing Pathway. In: Encyclopedia of Virology. Elsevier, pp. 141-149. ISBN 0123739357

Dalmay, T. (2005) Virus Induced Gene Silencing. In: Plant Epigenetics. Blackwell Publishing Ltd, pp. 223-237.

Monograph

Sweetman, D, Goljanek, K, Rathjen, T, Dalmay, T and Munsterberg, A (2009) MicroRNAs in muscle development. Meeting Abstract. UNSPECIFIED.

Book

Dalmay, T (2011) MicroRNAs in Development: Methods and Protocols. Methods in Molecular Biology . Humana Press. ISBN 1617790826